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Gm10044 predicted gene 10044 [ Mus musculus (house mouse) ]

Gene ID: 218695, updated on 26-Sep-2022

Summary

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Official Symbol
Gm10044provided by MGI
Official Full Name
predicted gene 10044provided by MGI
Gene description
ankyrin repeat domain containing protein
Primary source
MGI:MGI:3641749
See related
AllianceGenome:MGI:3641749
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 15.2) and colon adult (RPKM 0.4) See more
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Genomic context

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See Gm10044 in Genome Data Viewer
Location:
14 A1; 14
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (14676128..14718389)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (7751383..7793645, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene filamin, beta Neighboring gene predicted gene 8396 Neighboring gene predicted gene, 38418 Neighboring gene alpha-takusan pseudogene Neighboring gene predicted gene 10338

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • ankyrin repeat domain containing protein

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 30B; pneumococcal serine-rich repeat protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_175378.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC129222

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    14676128..14718389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017316348.2 → XP_017171837.1  ankyrin repeat domain-containing protein 30B isoform X1

    Conserved Domains (3) summary
    sd00045
    Location:82 → 111
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:85 → 176
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:51 → 101
    Ank_4; Ankyrin repeats (many copies)

  2. XM_017316349.2 → XP_017171838.1  pneumococcal serine-rich repeat protein isoform X2

    Conserved Domains (3) summary
    sd00045
    Location:82 → 111
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:85 → 176
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:51 → 101
    Ank_4; Ankyrin repeats (many copies)

  3. XM_017316350.2 → XP_017171839.1  ankyrin repeat domain-containing protein 30B isoform X3

    Conserved Domains (3) summary
    sd00045
    Location:82 → 111
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:85 → 176
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:51 → 101
    Ank_4; Ankyrin repeats (many copies)

RNA

  1. XR_003951007.2 RNA Sequence

  2. XR_004938470.1 RNA Sequence

  3. XR_003951008.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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