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Fam161b family with sequence similarity 161, member B [ Mus musculus (house mouse) ]

Gene ID: 217705, updated on 30-Apr-2024

Summary

Official Symbol
Fam161bprovided by MGI
Official Full Name
family with sequence similarity 161, member Bprovided by MGI
Primary source
MGI:MGI:2443027
See related
Ensembl:ENSMUSG00000021234 AllianceGenome:MGI:2443027
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9330169D17; 9830169C18Rik
Summary
Predicted to be involved in cilium organization. Predicted to be located in cytoplasmic microtubule. Predicted to colocalize with cilium. Orthologous to human FAM161B (FAM161 centrosomal protein B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E18 (RPKM 4.6), CNS E14 (RPKM 4.6) and 22 other tissues See more
Orthologs
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Genomic context

See Fam161b in Genome Data Viewer
Location:
12 D1; 12 39.17 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (84392088..84408633, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (84345309..84361860, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10765 Neighboring gene prostaglandin reductase 2 Neighboring gene zinc finger protein 410 Neighboring gene LSM6 homolog, U6 small nuclear RNA associated pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E1445 Neighboring gene coenzyme Q6 monooxygenase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:85729760-85729947 Neighboring gene STARR-positive B cell enhancer ABC_E8493 Neighboring gene basal body orientation factor 1 Neighboring gene ring finger protein 113A2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cilium organization IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
colocalizes_with cilium IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasmic microtubule ISO
Inferred from Sequence Orthology
more info
 
located_in microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358283.2NP_001345212.1  protein FAM161B

    Status: VALIDATED

    Source sequence(s)
    AC120402, AC159649
    Consensus CDS
    CCDS26043.1
    UniProtKB/Swiss-Prot
    Q8BQX8, Q8BSL9, Q8CB59, Q8CBZ3
    Related
    ENSMUSP00000070407.3, ENSMUST00000065536.9
    Conserved Domains (1) summary
    pfam10595
    Location:168535
    UPF0564; Uncharacterized protein family UPF0564
  2. NM_172581.4NP_766169.1  protein FAM161B

    See identical proteins and their annotated locations for NP_766169.1

    Status: VALIDATED

    Source sequence(s)
    AC120402, AC159649
    Consensus CDS
    CCDS26043.1
    UniProtKB/Swiss-Prot
    Q8BQX8, Q8BSL9, Q8CB59, Q8CBZ3
    Related
    ENSMUSP00000021659.2, ENSMUST00000021659.2
    Conserved Domains (1) summary
    pfam10595
    Location:168535
    UPF0564; Uncharacterized protein family UPF0564

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    84392088..84408633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157324.1XP_036013217.1  protein FAM161B isoform X1

    Conserved Domains (1) summary
    pfam10595
    Location:168529
    UPF0564; Uncharacterized protein family UPF0564

RNA

  1. XR_003950036.2 RNA Sequence