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Asb16 ankyrin repeat and SOCS box-containing 16 [ Mus musculus (house mouse) ]

Gene ID: 217217, updated on 3-Apr-2018

Summary

Official Symbol
Asb16provided by MGI
Official Full Name
ankyrin repeat and SOCS box-containing 16provided by MGI
Primary source
MGI:MGI:2654437
See related
Ensembl:ENSMUSG00000034768 Vega:OTTMUSG00000002679
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in mammary gland adult (RPKM 6.5), colon adult (RPKM 1.6) and 11 other tissues See more
Orthologs

Genomic context

See Asb16 in Genome Data Viewer
Location:
11; 11 D
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (102268823..102278061)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (102130137..102139375)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene histone deacetylase 5 Neighboring gene microRNA 8101 Neighboring gene cDNA sequence BC030867 Neighboring gene transmembrane and ubiquitin-like domain containing 2 Neighboring gene ataxin 7-like 3 Neighboring gene predicted gene, 33851

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ankyrin repeat and SOCS box protein 16
Names
ASB-16
ankyrin repeat domain-containing SOCS box protein Asb-16

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_148953.2NP_683755.1  ankyrin repeat and SOCS box protein 16

    See identical proteins and their annotated locations for NP_683755.1

    Status: PROVISIONAL

    Source sequence(s)
    AL954730
    Consensus CDS
    CCDS25493.1
    UniProtKB/Swiss-Prot
    Q8VHS5
    Related
    ENSMUSP00000038450.4, OTTMUSP00000002499, ENSMUST00000036467.4, OTTMUST00000005263
    Conserved Domains (4) summary
    cd00204
    Location:114228
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd03716
    Location:406446
    SOCS_ASB_like; SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable ...
    pfam12796
    Location:115204
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:114140
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    102268823..102278061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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