Format

Send to:

Choose Destination

Phlda1 pleckstrin homology like domain, family A, member 1 [ Mus musculus (house mouse) ]

Gene ID: 21664, updated on 8-Dec-2018

Summary

Official Symbol
Phlda1provided by MGI
Official Full Name
pleckstrin homology like domain, family A, member 1provided by MGI
Primary source
MGI:MGI:1096880
See related
Ensembl:ENSMUSG00000020205
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tdag; TDAG51; DT1P1B11
Expression
Broad expression in adrenal adult (RPKM 67.6), stomach adult (RPKM 50.4) and 23 other tissues See more
Orthologs

Genomic context

See Phlda1 in Genome Data Viewer
Location:
10; 10 D1
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (111506286..111508649)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (110943342..110945705)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene nucleosome assembly protein 1-like 1 Neighboring gene high mobility group box 2 pseudogene Neighboring gene predicted gene, 40762 Neighboring gene predicted gene, 30193

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
FasL biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
pleckstrin homology-like domain family A member 1
Names
PQ-rich protein
PQR protein
T-cell death associated
T-cell death-associated gene 51 protein
proline- and glutamine-rich protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009344.3NP_033370.2  pleckstrin homology-like domain family A member 1

    See identical proteins and their annotated locations for NP_033370.2

    Status: VALIDATED

    Source sequence(s)
    BY378082, U44088
    Consensus CDS
    CCDS24167.2
    UniProtKB/Swiss-Prot
    Q62392
    Related
    ENSMUSP00000132815.1, ENSMUST00000164773.1
    Conserved Domains (2) summary
    smart00233
    Location:154261
    PH; Pleckstrin homology domain
    pfam12286
    Location:250274
    DUF3622; Protein of unknown function (DUF3622)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    111506286..111508649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center