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Cfap36 cilia and flagella associated protein 36 [ Mus musculus (house mouse) ]

Gene ID: 216618, updated on 9-Mar-2023

Summary

Official Symbol
Cfap36provided by MGI
Official Full Name
cilia and flagella associated protein 36provided by MGI
Primary source
MGI:MGI:1913994
See related
Ensembl:ENSMUSG00000020462 AllianceGenome:MGI:1913994
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ccdc104; 2300003H10; 4931428D14Rik
Summary
Enables protein N-terminus binding activity. Located in ciliary base. Is expressed in central nervous system; embryo; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human CFAP36 (cilia and flagella associated protein 36). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 16.8), frontal lobe adult (RPKM 11.1) and 19 other tissues See more
Orthologs
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Genomic context

See Cfap36 in Genome Data Viewer
Location:
11; 11 A3.3
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (29168912..29197317, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (29218918..29247317, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene polyribonucleotide nucleotidyltransferase 1 Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene predicted gene, 51940 Neighboring gene fibrillarin pseudogene Neighboring gene predicted gene, 23109

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in axoneme IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
is_active_in ciliary base IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in ciliary base IDA
Inferred from Direct Assay
more info
PubMed 
located_in ciliary transition zone ISO
Inferred from Sequence Orthology
more info
 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cilia- and flagella-associated protein 36
Names
coiled-coil domain containing 104
coiled-coil domain-containing protein 104

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025740.3NP_080016.1  cilia- and flagella-associated protein 36

    See identical proteins and their annotated locations for NP_080016.1

    Status: PROVISIONAL

    Source sequence(s)
    AL935054, BX294116
    Consensus CDS
    CCDS24493.1
    UniProtKB/Swiss-Prot
    Q8C6E0, Q9CWQ4
    Related
    ENSMUSP00000020754.4, ENSMUST00000020754.10
    Conserved Domains (1) summary
    pfam11527
    Location:15119
    ARL2_Bind_BART; The ARF-like 2 binding protein BART

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    29168912..29197317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245800.2XP_030101660.1  cilia- and flagella-associated protein 36 isoform X1