U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Lgalsl galectin like [ Mus musculus (house mouse) ]

Gene ID: 216551, updated on 26-Sep-2022

Summary

Go to the top of the page Help
Official Symbol
Lgalslprovided by MGI
Official Full Name
galectin likeprovided by MGI
Primary source
MGI:MGI:1916114
See related
Ensembl:ENSMUSG00000042363 AllianceGenome:MGI:1916114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Grpa; Hspc159; Lgalsla; A530071M23; 1110067D22Rik
Summary
Predicted to enable carbohydrate binding activity. Located in collagen-containing extracellular matrix. Is expressed in several structures, including cerebral cortex; dorsal root ganglion; retina nuclear layer; submandibular gland primordium; and thoracic segment skeleton. Orthologous to human LGALSL (galectin like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 11.9), cerebellum adult (RPKM 10.4) and 26 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Lgalsl in Genome Data Viewer
Location:
11 A3.1; 11 13.53 cM
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (20773355..20781916, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (20823355..20831916, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene aftiphilin Neighboring gene predicted gene, 46272 Neighboring gene predicted gene, 32213 Neighboring gene predicted gene, 22807 Neighboring gene predicted gene, 53672

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparative transcription map of the wobbler critical region on mouse chromosome 11 and the homologous region on human chromosome 2p13-14. Fuchs S, et al. BMC Genet, 2002 Aug 13. PMID 12174196, Free PMC Article
  2. Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression. Naba A, et al. Sci Rep, 2017 Jan 10. PMID 28071719, Free PMC Article
  3. The level of the transcription factor Pax6 is essential for controlling the balance between neural stem cell self-renewal and neurogenesis. Sansom SN, et al. PLoS Genet, 2009 Jun. PMID 19521500, Free PMC Article
  4. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  5. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article

See all (23) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
galectin-related protein
Names
galectin-related protein A
lectin galactoside-binding-like protein A
lectin, galactoside binding-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173752.4 → NP_776113.1  galectin-related protein

    See identical proteins and their annotated locations for NP_776113.1

    Status: VALIDATED

    Source sequence(s)
    AK041053, AK081513, BE979710
    Consensus CDS
    CCDS24461.1
    UniProtKB/Swiss-Prot
    Q8C4P8, Q8VED9
    Related
    ENSMUSP00000044342.9, ENSMUST00000047028.9
    Conserved Domains (1) summary
    smart00908
    Location:46 → 170
    Gal-bind_lectin; Galactoside-binding lectin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    20773355..20781916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514629.3 → XP_006514692.1  galectin-related protein isoform X2

    See identical proteins and their annotated locations for XP_006514692.1

    Conserved Domains (1) summary
    smart00908
    Location:38 → 162
    Gal-bind_lectin; Galactoside-binding lectin

  2. XM_030245782.2 → XP_030101642.1  galectin-related protein isoform X1

    Conserved Domains (1) summary
    smart00908
    Location:93 → 217
    Gal-bind_lectin; Galactoside-binding lectin
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VED9.1 GenPept UniProtKB/Swiss-Prot:Q8VED9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous