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Zmat1 zinc finger, matrin type 1 [ Mus musculus (house mouse) ]

Gene ID: 215693, updated on 22-May-2018

Summary

Official Symbol
Zmat1provided by MGI
Official Full Name
zinc finger, matrin type 1provided by MGI
Primary source
MGI:MGI:2442284
See related
Ensembl:ENSMUSG00000052676 Vega:OTTMUSG00000018759
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AW990744; A230096A06; B930008K04Rik
Expression
Ubiquitous expression in frontal lobe adult (RPKM 2.0), cerebellum adult (RPKM 1.5) and 28 other tissues See more
Orthologs

Genomic context

See Zmat1 in Genome Data Viewer
Location:
X; X E3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (134971372..135009209, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (131505911..131543748, complement)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene developmental pluripotency associated 2 pseudogene Neighboring gene nuclear RNA export factor 2 Neighboring gene RIKEN cDNA 3632454L22 gene Neighboring gene preferentially expressed antigen in melanoma-like 3 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger matrin-type protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175446.3NP_780655.2  zinc finger matrin-type protein 1

    See identical proteins and their annotated locations for NP_780655.2

    Status: VALIDATED

    Source sequence(s)
    AL361464, AW044958, BC067022
    Consensus CDS
    CCDS41126.1
    UniProtKB/TrEMBL
    G5E8E4
    Related
    ENSMUSP00000066815.5, ENSMUST00000064659.5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    134971372..135009209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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