Format

Send to:

Choose Destination

Sec22c SEC22 homolog C, vesicle trafficking protein [ Mus musculus (house mouse) ]

Gene ID: 215474, updated on 31-Jan-2019

Summary

Official Symbol
Sec22cprovided by MGI
Official Full Name
SEC22 homolog C, vesicle trafficking proteinprovided by MGI
Primary source
MGI:MGI:2447871
See related
Ensembl:ENSMUSG00000061536
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sec22l3; 4932412K21; C530046H07; 5930407I15Rik
Expression
Ubiquitous expression in thymus adult (RPKM 5.4), duodenum adult (RPKM 4.2) and 28 other tissues See more
Orthologs

Genomic context

See Sec22c in Genome Data Viewer
Location:
9; 9 F4
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (121680045..121706265, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (121589163..121614147, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene lysozyme-like 4 Neighboring gene lysozyme-like 4, opposite strand Neighboring gene vasoactive intestinal peptide receptor 1 Neighboring gene SS18, nBAF chromatin remodeling complex subunit like 2 Neighboring gene natural killer tumor recognition sequence Neighboring gene RIKEN cDNA E530011L22 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
protein transport IEA
Inferred from Electronic Annotation
more info
 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vesicle-trafficking protein SEC22c
Names
SEC22 vesicle trafficking protein homolog C
SEC22 vesicle trafficking protein-like 3
SEC22 vesicle trafficking protein-like C

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164562.1NP_001158034.1  vesicle-trafficking protein SEC22c

    See identical proteins and their annotated locations for NP_001158034.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC159810, AK044249, BC046289, CJ247427
    Consensus CDS
    CCDS23634.1
    UniProtKB/Swiss-Prot
    Q8BXT9
    Related
    ENSMUSP00000107185.2, ENSMUST00000111560.9
    Conserved Domains (1) summary
    pfam13774
    Location:3899
    Longin; Regulated-SNARE-like domain
  2. NM_178677.4NP_848792.2  vesicle-trafficking protein SEC22c

    See identical proteins and their annotated locations for NP_848792.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC159810, BB661643, BC046289, CJ247427
    Consensus CDS
    CCDS23634.1
    UniProtKB/Swiss-Prot
    Q8BXT9
    Related
    ENSMUSP00000077628.4, ENSMUST00000078547.11
    Conserved Domains (1) summary
    pfam13774
    Location:3899
    Longin; Regulated-SNARE-like domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    121680045..121706265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006512043.3XP_006512106.1  vesicle-trafficking protein SEC22c isoform X1

    See identical proteins and their annotated locations for XP_006512106.1

    UniProtKB/Swiss-Prot
    Q8BXT9
    Conserved Domains (1) summary
    pfam13774
    Location:3899
    Longin; Regulated-SNARE-like domain
  2. XM_006512042.3XP_006512105.1  vesicle-trafficking protein SEC22c isoform X1

    See identical proteins and their annotated locations for XP_006512105.1

    UniProtKB/Swiss-Prot
    Q8BXT9
    Conserved Domains (1) summary
    pfam13774
    Location:3899
    Longin; Regulated-SNARE-like domain
  3. XM_017313274.1XP_017168763.1  vesicle-trafficking protein SEC22c isoform X3

  4. XM_006512044.3XP_006512107.1  vesicle-trafficking protein SEC22c isoform X2

    Conserved Domains (1) summary
    pfam13774
    Location:3899
    Longin; Regulated-SNARE-like domain
  5. XM_006512045.1XP_006512108.1  vesicle-trafficking protein SEC22c isoform X3

RNA

  1. XR_001778849.1 RNA Sequence

Support Center