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Hdhd5 haloacid dehalogenase like hydrolase domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 214932, updated on 26-Sep-2022

Summary

Official Symbol
Hdhd5provided by MGI
Official Full Name
haloacid dehalogenase like hydrolase domain containing 5provided by MGI
Primary source
MGI:MGI:2136976
See related
Ensembl:ENSMUSG00000058979 AllianceGenome:MGI:2136976
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cecr5; A930002G03Rik
Summary
Predicted to be involved in glycerophospholipid biosynthetic process. Located in mitochondrion. Orthologous to human HDHD5 (haloacid dehalogenase like hydrolase domain containing 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 11.2), kidney adult (RPKM 7.0) and 28 other tissues See more
Orthologs
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Genomic context

See Hdhd5 in Genome Data Viewer
Location:
6 F1; 6 56.95 cM
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (120486453..120508319, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (120509492..120531363, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene interleukin 17 receptor A Neighboring gene transmembrane protein 121B Neighboring gene RIKEN cDNA 1700072O05 gene Neighboring gene nonconserved acetylation island sequence M73 enhancer Neighboring gene CECR2, histone acetyl-lysine reader Neighboring gene predicted gene, 53339

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC25951

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in glycerophospholipid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
haloacid dehalogenase-like hydrolase domain-containing 5
Names
cat eye syndrome chromosome region, candidate 5 homolog
cat eye syndrome critical region protein 5 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144815.2NP_659064.1  haloacid dehalogenase-like hydrolase domain-containing 5 precursor

    See identical proteins and their annotated locations for NP_659064.1

    Status: VALIDATED

    Source sequence(s)
    BC014705
    Consensus CDS
    CCDS20483.1
    UniProtKB/Swiss-Prot
    Q91WM2
    Related
    ENSMUSP00000074775.7, ENSMUST00000075303.7
    Conserved Domains (2) summary
    TIGR01456
    Location:47358
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
    pfam13344
    Location:49152
    Hydrolase_6; Haloacid dehalogenase-like hydrolase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    120486453..120508319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030255305.1XP_030111165.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X1

    Conserved Domains (1) summary
    TIGR01456
    Location:1236
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
  2. XM_036166013.1XP_036021906.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X1

    Conserved Domains (1) summary
    TIGR01456
    Location:1236
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
  3. XM_036166014.1XP_036021907.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X3

    Conserved Domains (1) summary
    TIGR01456
    Location:1190
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
  4. XM_011241282.3XP_011239584.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X2

    See identical proteins and their annotated locations for XP_011239584.1

    Conserved Domains (1) summary
    TIGR01456
    Location:24192
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
  5. XM_030255308.1XP_030111168.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X4

    Conserved Domains (1) summary
    TIGR01456
    Location:1151
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
  6. XM_030255309.1XP_030111169.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X4

    Conserved Domains (1) summary
    TIGR01456
    Location:1151
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
  7. XM_030255307.2XP_030111167.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X4

    Conserved Domains (1) summary
    TIGR01456
    Location:1151
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
  8. XM_036166015.1XP_036021908.1  haloacid dehalogenase-like hydrolase domain-containing 5 isoform X4

    Conserved Domains (1) summary
    TIGR01456
    Location:1151
    CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

RNA

  1. XR_868852.4 RNA Sequence

  2. XR_003956182.2 RNA Sequence

  3. XR_003956183.2 RNA Sequence