U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Edrf1 erythroid differentiation regulatory factor 1 [ Mus musculus (house mouse) ]

Gene ID: 214764, updated on 3-Apr-2024

Summary

Official Symbol
Edrf1provided by MGI
Official Full Name
erythroid differentiation regulatory factor 1provided by MGI
Primary source
MGI:MGI:1919831
See related
Ensembl:ENSMUSG00000039990 AllianceGenome:MGI:1919831
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2700050L05Rik
Summary
Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human EDRF1 (erythroid differentiation regulatory factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 5.7), CNS E14 (RPKM 5.2) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Edrf1 in Genome Data Viewer
Location:
7 F3; 7 77.18 cM
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (133239422..133274710)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (133637544..133673017)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene testis expressed 36 Neighboring gene predicted gene, 35625 Neighboring gene STARR-positive B cell enhancer ABC_E2851 Neighboring gene matrix metallopeptidase 21 Neighboring gene uroporphyrinogen III synthase Neighboring gene STARR-positive B cell enhancer ABC_E4982 Neighboring gene STARR-positive B cell enhancer ABC_E10481 Neighboring gene BRCA2 and CDKN1A interacting protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC27934, MGC58090

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
erythroid differentiation-related factor 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408042.1NP_001394971.1  erythroid differentiation-related factor 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC127348
  2. NM_001408043.1NP_001394972.1  erythroid differentiation-related factor 1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC127348
    UniProtKB/TrEMBL
    D3YZE7
    Related
    ENSMUSP00000115641.3, ENSMUST00000128901.9
  3. NM_001408044.1NP_001394973.1  erythroid differentiation-related factor 1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC127348
  4. NM_178115.5NP_835216.3  erythroid differentiation-related factor 1 isoform 1

    See identical proteins and their annotated locations for NP_835216.3

    Status: VALIDATED

    Source sequence(s)
    AC127348
    Consensus CDS
    CCDS21932.2
    UniProtKB/Swiss-Prot
    Q6GQV7, Q80ZY3, Q8R3P5
    UniProtKB/TrEMBL
    E9Q9F9
    Related
    ENSMUSP00000059166.7, ENSMUST00000051169.13

RNA

  1. NR_176447.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127348
  2. NR_176448.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127348

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    133239422..133274710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_145995.1: Suppressed sequence

    Description
    NM_145995.1: This RefSeq was temporarily suppressed because the CDS was partial.