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Trim38 tripartite motif-containing 38 [ Mus musculus (house mouse) ]

Gene ID: 214158, updated on 3-Jun-2018

Summary

Official Symbol
Trim38provided by MGI
Official Full Name
tripartite motif-containing 38provided by MGI
Primary source
MGI:MGI:2684869
See related
Ensembl:ENSMUSG00000064140 Vega:OTTMUSG00000000576
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm23
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See Trim38 in Genome Data Viewer
Location:
13; 13 A3.1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (23778500..23791731)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (23874441..23883364)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene histone cluster 1, H3a Neighboring gene histone cluster 1, H1a Neighboring gene predicted gene 11337 Neighboring gene solute carrier family 17 (sodium phosphate), member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
E3 ubiquitin-protein ligase TRIM38
Names
RING finger protein 15
zinc finger protein RoRet
NP_001025106.1
XP_006516700.1
XP_011242605.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001029935.2NP_001025106.1  E3 ubiquitin-protein ligase TRIM38

    See identical proteins and their annotated locations for NP_001025106.1

    Status: VALIDATED

    Source sequence(s)
    AL590388
    Consensus CDS
    CCDS26370.1
    UniProtKB/TrEMBL
    Q5SZ99
    Related
    ENSMUSP00000073709.2, OTTMUSP00000000546, ENSMUST00000074067.3, OTTMUST00000001166
    Conserved Domains (4) summary
    smart00336
    Location:90127
    BBOX; B-Box-type zinc finger
    cd15815
    Location:282466
    SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
    cl17238
    Location:1661
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl23765
    Location:139262
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

    Range
    23778500..23791731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516637.2XP_006516700.1  E3 ubiquitin-protein ligase TRIM38 isoform X1

    See identical proteins and their annotated locations for XP_006516700.1

    UniProtKB/TrEMBL
    Q5SZ99
    Related
    ENSMUSP00000153240.1, ENSMUST00000226039.1
    Conserved Domains (4) summary
    smart00336
    Location:90127
    BBOX; B-Box-type zinc finger
    cd15815
    Location:282466
    SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
    cl17238
    Location:1661
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl23765
    Location:139262
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
  2. XM_011244303.1XP_011242605.1  E3 ubiquitin-protein ligase TRIM38 isoform X1

    See identical proteins and their annotated locations for XP_011242605.1

    UniProtKB/TrEMBL
    Q5SZ99
    Conserved Domains (4) summary
    smart00336
    Location:90127
    BBOX; B-Box-type zinc finger
    cd15815
    Location:282466
    SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
    cl17238
    Location:1661
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl23765
    Location:139262
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
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