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Tbx6 T-box 6 [ Mus musculus (house mouse) ]

Gene ID: 21389, updated on 3-Jun-2018
Official Symbol
Tbx6provided by MGI
Official Full Name
T-box 6provided by MGI
Primary source
MGI:MGI:102539
See related
Ensembl:ENSMUSG00000030699 Vega:OTTMUSG00000037609
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
rv
Expression
Broad expression in thymus adult (RPKM 12.1), spleen adult (RPKM 9.0) and 21 other tissues See more
Orthologs
See Tbx6 in Genome Data Viewer
Location:
7 F3; 7 69.25 cM
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (126781483..126785548)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133924997..133929062)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 3 Neighboring gene yippee like 3 Neighboring gene protein phosphatase 4, catalytic subunit Neighboring gene aldolase A, fructose-bisphosphate

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
T-box transcription factor TBX6
Names
T-box protein 6
rib-vertebrae

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011538.2NP_035668.2  T-box transcription factor TBX6

    See identical proteins and their annotated locations for NP_035668.2

    Status: VALIDATED

    Source sequence(s)
    AI152111, AW047428, BF607954, U57331
    Consensus CDS
    CCDS21843.1
    UniProtKB/Swiss-Prot
    P70327
    Related
    ENSMUSP00000091579.4, OTTMUSP00000054297, ENSMUST00000094037.4, OTTMUST00000097002
    Conserved Domains (1) summary
    cd00182
    Location:90277
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

    Range
    126781483..126785548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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