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8030462N17Rik RIKEN cDNA 8030462N17 gene [ Mus musculus (house mouse) ]

Gene ID: 212163, updated on 10-Oct-2019

Summary

Official Symbol
8030462N17Rikprovided by MGI
Official Full Name
RIKEN cDNA 8030462N17 geneprovided by MGI
Primary source
MGI:MGI:2444951
See related
Ensembl:ENSMUSG00000047466
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Akd2; Ark2N
Expression
Ubiquitous expression in cerebellum adult (RPKM 5.2), frontal lobe adult (RPKM 3.7) and 28 other tissues See more
Orthologs

Genomic context

See 8030462N17Rik in Genome Data Viewer
Location:
18; 18 E3
Exon count:
8
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (77631488..77714490, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (77872020..77952749, complement)

Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene ring finger protein 165 Neighboring gene predicted gene, 41784 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene RIKEN cDNA 4930465K10 gene Neighboring gene RIKEN cDNA A330094K24 gene Neighboring gene uncharacterized LOC115488900

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C18orf25 homolog
Names
arkadia 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368759.1NP_001355688.1  uncharacterized protein C18orf25 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC102195
    Conserved Domains (1) summary
    pfam15303
    Location:67213
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
  2. NM_178670.4NP_848785.2  uncharacterized protein C18orf25 homolog isoform 1

    See identical proteins and their annotated locations for NP_848785.2

    Status: VALIDATED

    Source sequence(s)
    AC102195
    Consensus CDS
    CCDS29355.1
    UniProtKB/Swiss-Prot
    Q8BH50
    UniProtKB/TrEMBL
    Q0VAW6
    Related
    ENSMUSP00000074225.4, ENSMUST00000074653.5
    Conserved Domains (1) summary
    pfam15303
    Location:67213
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000084.6 Reference GRCm38.p6 C57BL/6J

    Range
    77631488..77714490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526426.2XP_006526489.1  uncharacterized protein C18orf25 homolog isoform X1

    See identical proteins and their annotated locations for XP_006526489.1

    UniProtKB/TrEMBL
    Q0VAW6
    Related
    ENSMUSP00000158108.1, ENSMUST00000237203.1
    Conserved Domains (1) summary
    pfam15303
    Location:67213
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
  2. XM_011247069.3XP_011245371.1  uncharacterized protein C18orf25 homolog isoform X3

    See identical proteins and their annotated locations for XP_011245371.1

    Conserved Domains (1) summary
    pfam15303
    Location:67213
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
  3. XM_006526428.2XP_006526491.1  uncharacterized protein C18orf25 homolog isoform X5

  4. XM_011247067.3XP_011245369.1  uncharacterized protein C18orf25 homolog isoform X2

    See identical proteins and their annotated locations for XP_011245369.1

    Conserved Domains (1) summary
    pfam15303
    Location:67213
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
  5. XM_011247070.3XP_011245372.1  uncharacterized protein C18orf25 homolog isoform X4

    Conserved Domains (1) summary
    pfam15303
    Location:67213
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

Reference GRCm38.p6 PATCHES

Genomic

  1. NW_019168530.1 Reference GRCm38.p6 PATCHES

    Range
    7536..90536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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