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Plac9 placenta specific 9 [ Mus musculus (house mouse) ]

Gene ID: 211623, updated on 28-Apr-2022

Summary

Official Symbol
Plac9provided by MGI
Official Full Name
placenta specific 9provided by MGI
Primary source
MGI:MGI:2663998
See related
Ensembl:ENSMUSG00000095304 AllianceGenome:MGI:2663998
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm9780; Plac9a; Plac9b; Gm10393
Summary
Predicted to be located in extracellular region. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sternum. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in lung adult (RPKM 185.1), subcutaneous fat pad adult (RPKM 170.7) and 17 other tissues See more
Orthologs
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Genomic context

See Plac9 in Genome Data Viewer
Location:
14; 14 A3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (25888827..25903317, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (25888403..25902893, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (26707889..26722379, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene zinc finger, CCHC domain containing 24 Neighboring gene annexin A11 Neighboring gene uncharacterized LOC118568117 Neighboring gene transmembrane protein 254 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (2) 

General gene information

Markers

Homology

Clone Names

  • MGC41689

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
placenta-specific protein 9
Names
placenta specific 9a
placenta specific 9b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207229.3NP_997112.1  placenta-specific protein 9 precursor

    See identical proteins and their annotated locations for NP_997112.1

    Status: VALIDATED

    Source sequence(s)
    AC165285
    Consensus CDS
    CCDS36832.1
    UniProtKB/Swiss-Prot
    Q8K262
    Related
    ENSMUSP00000056665.8, ENSMUST00000052286.16
    Conserved Domains (1) summary
    pfam15205
    Location:37106
    PLAC9; Placenta-specific protein 9

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    25888827..25903317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001270503.1: Suppressed sequence

    Description
    NM_001270503.1: This RefSeq was removed because it was redundant with NM_207229.1 after a merge.
  2. NM_001374766.1: Suppressed sequence

    Description
    NM_001374766.1: This RefSeq was removed because it was redundant with NM_207229.1 after a merge.