U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

6720489N17Rik RIKEN cDNA 6720489N17 gene [ Mus musculus (house mouse) ]

Gene ID: 211378, updated on 26-Sep-2022

Summary

Go to the top of the page Help
Official Symbol
6720489N17Rikprovided by MGI
Official Full Name
RIKEN cDNA 6720489N17 geneprovided by MGI
Primary source
MGI:MGI:2443901
See related
Ensembl:ENSMUSG00000072066 AllianceGenome:MGI:2443901
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9330128I06
Expression
Broad expression in whole brain E14.5 (RPKM 1.6), CNS E14 (RPKM 1.5) and 16 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See 6720489N17Rik in Genome Data Viewer
Location:
13; 13 B3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62747134..62783726, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62598066..62638257, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 934 Neighboring gene predicted gene, 24095 Neighboring gene predicted gene, 38639 Neighboring gene predicted gene, 36298 Neighboring gene pluripotency associated transcript 25 Neighboring gene calcium binding and coiled-coil domain 2 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC211378

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324406.1 → NP_001311335.1  uncharacterized protein LOC211378 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT030240

  2. NM_173381.1 → NP_775557.1  uncharacterized protein LOC211378 isoform 1

    See identical proteins and their annotated locations for NP_775557.1

    Status: VALIDATED

    Source sequence(s)
    AK033001, AK033958
    Consensus CDS
    CCDS79202.1
    UniProtKB/TrEMBL
    Q8BGU1
    Related
    ENSMUSP00000144207.2, ENSMUST00000201563.4
    Conserved Domains (2) summary
    smart00349
    Location:4 → 44
    KRAB; krueppel associated box
    pfam01352
    Location:4 → 43
    KRAB; KRAB box

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    62747134..62783726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315473.3 → XP_017170962.1  uncharacterized protein LOC211378 isoform X1

    Conserved Domains (1) summary
    pfam01352
    Location:20 → 60
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous