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Slc38a5 solute carrier family 38, member 5 [ Mus musculus (house mouse) ]

Gene ID: 209837, updated on 31-Jan-2019

Summary

Official Symbol
Slc38a5provided by MGI
Official Full Name
solute carrier family 38, member 5provided by MGI
Primary source
MGI:MGI:2148066
See related
Ensembl:ENSMUSG00000031170
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SN2; JM24; C81234; E330031E14
Expression
Biased expression in genital fat pad adult (RPKM 1166.3) and ovary adult (RPKM 77.4) See more
Orthologs

Genomic context

See Slc38a5 in Genome Data Viewer
Location:
X; X A1.1
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (8271381..8280179)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (7848518..7857305)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene porcupine O-acyltransferase Neighboring gene predicted gene, 33135 Neighboring gene FtsJ RNA methyltransferase homolog 1 (E. coli) Neighboring gene synovial sarcoma, X member B10 Neighboring gene synovial sarcoma, X member B9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (1) 

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
amino acid transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
glycine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
glycine transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
neutral amino acid transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
amino acid transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
glycine transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
glycine transport ISO
Inferred from Sequence Orthology
more info
 
neutral amino acid transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sodium-coupled neutral amino acid transporter 5
Names
system N transporter 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172479.3NP_766067.2  sodium-coupled neutral amino acid transporter 5

    See identical proteins and their annotated locations for NP_766067.2

    Status: VALIDATED

    Source sequence(s)
    AK054485, AK158125, AL805902, BX523289
    Consensus CDS
    CCDS52990.1
    UniProtKB/Swiss-Prot
    Q3U1J0
    Related
    ENSMUSP00000033512.4, ENSMUST00000033512.10
    Conserved Domains (2) summary
    COG0814
    Location:56469
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:56466
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    8271381..8280179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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