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Taf3 TATA-box binding protein associated factor 3 [ Mus musculus (house mouse) ]

Gene ID: 209361, updated on 12-Aug-2019

Summary

Official Symbol
Taf3provided by MGI
Official Full Name
TATA-box binding protein associated factor 3provided by MGI
Primary source
MGI:MGI:2388097
See related
Ensembl:ENSMUSG00000025782
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
140kDa; TAF140; AW539625; TAFII140; TAFII-140; mTAFII140; 4933439M23Rik
Expression
Ubiquitous expression in bladder adult (RPKM 3.3), testis adult (RPKM 3.1) and 28 other tissues See more
Orthologs

Genomic context

See Taf3 in Genome Data Viewer
Location:
2; 2 A1
Exon count:
7
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (9914552..10048609, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (9836179..9970236, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13218 Neighboring gene RIKEN cDNA 4930412O13 gene Neighboring gene RIKEN cDNA 9230102O04 gene Neighboring gene GATA binding protein 3 Neighboring gene predicted gene 13262 Neighboring gene predicted gene, 31290 Neighboring gene thymosin beta-15A pseudogene Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 Neighboring gene predicted gene, 23608 Neighboring gene Kin17 DNA and RNA binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
p53 binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell ISO
Inferred from Sequence Orthology
more info
 
nuclear membrane ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
transcription factor TFIID complex ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
transcription initiation factor TFIID subunit 3
Names
140 kDa TATA box-binding protein-associated factor
RNA polymerase II transcription factor, TFIID subunit
TAF(II)140
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
TBP-associated factor 3
transcription initiation factor TFIID 140 kDa subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027748.3NP_082024.2  transcription initiation factor TFIID subunit 3

    See identical proteins and their annotated locations for NP_082024.2

    Status: VALIDATED

    Source sequence(s)
    AK136045, AW049595, BB621106, BC137618, CX763644
    Consensus CDS
    CCDS15675.1
    UniProtKB/Swiss-Prot
    Q5HZG4
    UniProtKB/TrEMBL
    A2ASY1
    Related
    ENSMUSP00000026888.4, ENSMUST00000026888.10
    Conserved Domains (3) summary
    smart00576
    Location:579
    BTP; Bromodomain transcription factors and PHD domain containing proteins
    cd15522
    Location:869914
    PHD_TAF3; PHD finger found in transcription initiation factor TFIID subunit 3 (TAF3)
    pfam16294
    Location:607656
    RSB_motif; RNSP1-SAP18 binding (RSB) motif

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p6 C57BL/6J

    Range
    9914552..10048609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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