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Surf2 surfeit gene 2 [ Mus musculus (house mouse) ]

Gene ID: 20931, updated on 26-Sep-2022

Summary

Official Symbol
Surf2provided by MGI
Official Full Name
surfeit gene 2provided by MGI
Primary source
MGI:MGI:98444
See related
Ensembl:ENSMUSG00000014873 AllianceGenome:MGI:98444
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Surf-2
Summary
Predicted to be located in nuclear speck; nucleolus; and plasma membrane. Is expressed in embryo. Orthologous to human SURF2 (surfeit 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver E14 (RPKM 14.7), liver E14.5 (RPKM 14.5) and 28 other tissues See more
Orthologs
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Genomic context

See Surf2 in Genome Data Viewer
Location:
2 A3; 2 19.1 cM
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (26806380..26810184)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (26916372..26920187)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD36 Neighboring gene ribosomal protein L7A Neighboring gene predicted gene, 24134 Neighboring gene surfeit gene 1 Neighboring gene surfeit gene 4 Neighboring gene predicted gene, 36591 Neighboring gene serine/threonine kinase-like domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013678.3NP_038706.1  surfeit locus protein 2

    See identical proteins and their annotated locations for NP_038706.1

    Status: VALIDATED

    Source sequence(s)
    AL773563
    Consensus CDS
    CCDS15816.1
    UniProtKB/Swiss-Prot
    P09926
    UniProtKB/TrEMBL
    Q4VAF7
    Related
    ENSMUSP00000015017.8, ENSMUST00000015017.8
    Conserved Domains (1) summary
    pfam05477
    Location:5241
    SURF2; Surfeit locus protein 2 (SURF2)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    26806380..26810184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006497827.5XP_006497890.1  surfeit locus protein 2 isoform X1

    Conserved Domains (1) summary
    pfam05477
    Location:5226
    SURF2; Surfeit locus protein 2 (SURF2)