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Supt4a suppressor of Ty 4A [ Mus musculus (house mouse) ]

Gene ID: 20922, updated on 2-Oct-2018

Summary

Official Symbol
Supt4aprovided by MGI
Official Full Name
suppressor of Ty 4Aprovided by MGI
Primary source
MGI:MGI:107416
See related
Ensembl:ENSMUSG00000020485 Vega:OTTMUSG00000001315
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Supt4h; Supt4h1; AL022777; Supt4h1a
Expression
Ubiquitous expression in liver E14 (RPKM 38.8), liver E14.5 (RPKM 36.0) and 28 other tissues See more
Orthologs

Genomic context

See Supt4a in Genome Data Viewer
Location:
11 C; 11 52.2 cM
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (87737507..87743617)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (87551067..87557119)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor family member 5 Neighboring gene ring finger protein 43 Neighboring gene RIKEN cDNA 1110028F11 gene Neighboring gene microRNA 142b Neighboring gene TSPO associated protein 1 Neighboring gene microRNA 142 Neighboring gene predicted gene, 34064

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein heterodimerization activity ISO
Inferred from Sequence Orthology
more info
 
single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
DSIF complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DSIF complex ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
transcription elongation factor SPT4-A
Names
DRB sensitivity-inducing factor small subunit 1
DSIF small subunit 1
Transcription elongation factor SPT4-A
suppressor of Ty 4 homolog 1
transcription elongation factor SPT4 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355753.1NP_001342682.1  transcription elongation factor SPT4-A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK002990, AL604022, BQ176059, W47755
    Conserved Domains (1) summary
    cd07973
    Location:4290
    Spt4; Transcription elongation factor Spt4
  2. NM_009296.2NP_033322.1  transcription elongation factor SPT4-A isoform 1

    See identical proteins and their annotated locations for NP_033322.1

    Status: VALIDATED

    Source sequence(s)
    BQ176059, DV044501, DV061290
    Consensus CDS
    CCDS36270.1
    UniProtKB/Swiss-Prot
    P63271
    Related
    ENSMUSP00000091487.5, OTTMUSP00000001305, ENSMUST00000093955.11
    Conserved Domains (1) summary
    cd07973
    Location:11108
    Spt4; Transcription elongation factor Spt4

RNA

  1. NR_149756.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK002990, AL604022, BQ176059, DV061290, W47755
  2. NR_149757.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK002990, AL604022, BQ176059, DV061290

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    87737507..87743617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006532742.2XP_006532805.1  transcription elongation factor SPT4-A isoform X1

    Conserved Domains (1) summary
    cd07973
    Location:4290
    Spt4; Transcription elongation factor Spt4
  2. XM_006532741.2XP_006532804.1  transcription elongation factor SPT4-A isoform X1

    Conserved Domains (1) summary
    cd07973
    Location:4290
    Spt4; Transcription elongation factor Spt4

Reference GRCm38.p4 NOD/ShiLtJ

Genomic

  1. NT_187003.1 Reference GRCm38.p4 NOD/ShiLtJ

    Range
    868756..874834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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