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Gipc3 GIPC PDZ domain containing family, member 3 [ Mus musculus (house mouse) ]

Gene ID: 209047, updated on 23-Jul-2018

Summary

Official Symbol
Gipc3provided by MGI
Official Full Name
GIPC PDZ domain containing family, member 3provided by MGI
Primary source
MGI:MGI:2387006
See related
Ensembl:ENSMUSG00000034872 Vega:OTTMUSG00000027857
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ahl5; Rgs19ip3
Expression
Broad expression in lung adult (RPKM 5.9), adrenal adult (RPKM 2.0) and 15 other tissues See more
Orthologs

Genomic context

See Gipc3 in Genome Data Viewer
Location:
10; 10 C1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (81336541..81343744, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (80800507..80806011, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene cactin, spliceosome C complex subunit Neighboring gene thromboxane A2 receptor Neighboring gene high mobility group 20B Neighboring gene major facilitator superfamily domain containing 12 Neighboring gene RIKEN cDNA 4930404N11 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
PDZ domain-containing protein GIPC3
Names
age related hearing loss 5
regulator of G-protein signaling 19 interacting protein 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_148951.2NP_683753.1  PDZ domain-containing protein GIPC3

    See identical proteins and their annotated locations for NP_683753.1

    Status: VALIDATED

    Source sequence(s)
    AB074494, AC155937
    Consensus CDS
    CCDS24054.1
    UniProtKB/Swiss-Prot
    Q8R5M0
    Related
    ENSMUSP00000049236.5, OTTMUSP00000034973, ENSMUST00000045102.6
    Conserved Domains (1) summary
    cd00992
    Location:95168
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    81336541..81343744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513444.3XP_006513507.1  PDZ domain-containing protein GIPC3 isoform X1

    Conserved Domains (2) summary
    cd00992
    Location:182255
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15265
    Location:406565
    FAM196; FAM196 family
  2. XM_006513445.2XP_006513508.1  PDZ domain-containing protein GIPC3 isoform X2

    Conserved Domains (1) summary
    cd00992
    Location:182255
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
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