Map6d1 MAP6 domain containing 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Map6d1provided by MGI
Official Full Name: MAP6 domain containing 1provided by MGI
Primary source: MGI:MGI:3607784
See related: Ensembl:ENSMUSG00000041205 AllianceGenome:MGI:3607784
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: A330066I15Rik
Summary: Enables calmodulin binding activity and microtubule binding activity. Acts upstream of or within N-terminal peptidyl-L-cysteine N-palmitoylation and negative regulation of microtubule depolymerization. Located in Golgi-associated vesicle and cis-Golgi network. Orthologous to human MAP6D1 (MAP6 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in cortex adult (RPKM 19.1), cerebellum adult (RPKM 16.7) and 6 other tissues See more
Orthologs: human all
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Genomic context

Location:: 16; 16 A3

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	16	NC_000082.7 (20052059..20060108, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	16	NC_000082.6 (20233309..20241358, complement)

Chromosome 16 - NC_000082.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

BB283017 (e-PCR)
- UniSTS:209181

NoName (e-PCR)
- UniSTS:488340

Homology

Homologs of the Map6d1 gene: The Map6d1 gene is conserved in human, chimpanzee, Rhesus monkey, cow, and rat.
Orthologs from Annotation Pipeline: 419 organisms have orthologs with human gene Map6d1
Orthologs

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables calmodulin binding	IDA Inferred from Direct Assay more info	PubMed
enables microtubule binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables microtubule binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within N-terminal peptidyl-L-cysteine N-palmitoylation	IDA Inferred from Direct Assay more info	PubMed
involved_in cytoskeleton-dependent intracellular transport	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in microtubule cytoskeleton organization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within negative regulation of microtubule depolymerization	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of microtubule cytoskeleton organization	IBA Inferred from Biological aspect of Ancestor more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
is_active_in Golgi-associated vesicle	IBA Inferred from Biological aspect of Ancestor more info	PubMed
located_in Golgi-associated vesicle	IDA Inferred from Direct Assay more info	PubMed
is_active_in cis-Golgi network	IBA Inferred from Biological aspect of Ancestor more info	PubMed
located_in cis-Golgi network	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
is_active_in microtubule	IBA Inferred from Biological aspect of Ancestor more info	PubMed

General protein information

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Preferred Names: MAP6 domain-containing protein 1

Names: 21 kDa STOP-like protein; SL21

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.