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Sprr2f small proline-rich protein 2F [ Mus musculus (house mouse) ]

Gene ID: 20760, updated on 8-Feb-2024

Summary

Official Symbol
Sprr2fprovided by MGI
Official Full Name
small proline-rich protein 2Fprovided by MGI
Primary source
MGI:MGI:1330349
See related
Ensembl:ENSMUSG00000050635 AllianceGenome:MGI:1330349
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within response to estradiol. Located in cytoplasm and nucleus. Is expressed in ureteric trunk. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in subcutaneous fat pad adult (RPKM 59.5) and ovary adult (RPKM 30.4) See more
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Genomic context

See Sprr2f in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92272494..92273754)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92365187..92366442)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene small proline-rich protein 2D Neighboring gene small proline-rich protein 2E Neighboring gene small proline-rich protein 2G Neighboring gene small proline-rich protein 2H

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General protein information

Preferred Names
small proline-rich protein 2F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011472.3NP_035602.1  small proline-rich protein 2F

    See identical proteins and their annotated locations for NP_035602.1

    Status: VALIDATED

    Source sequence(s)
    AC129296
    Consensus CDS
    CCDS57226.1
    UniProtKB/Swiss-Prot
    O70557
    Related
    ENSMUSP00000050902.2, ENSMUST00000050397.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92272494..92273754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)