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Spn-ps sialophorin, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 20738, updated on 8-Feb-2024

Summary

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Official Symbol
Spn-psprovided by MGI
Official Full Name
sialophorin, pseudogeneprovided by MGI
Primary source
MGI:MGI:104964
See related
Ensembl:ENSMUSG00000121678 AllianceGenome:MGI:104964
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cd43-ps
Expression
Restricted expression toward testis adult (RPKM 66.1) See more
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Genomic context

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Location:
15 E3; 15 45.36 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (90775599..90782679, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (90891396..90898476, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L31, pseudogene 8 Neighboring gene STARR-seq mESC enhancer starr_39485 Neighboring gene STARR-seq mESC enhancer starr_39486 Neighboring gene transcription elongation factor A (SII) 1, pseudogene 1 Neighboring gene predicted gene, 36618 Neighboring gene kinesin family member 21A Neighboring gene VISTA enhancer mm1478 Neighboring gene STARR-seq mESC enhancer starr_39489 Neighboring gene predicted gene, 52216

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Protein sequence and gene structure for mouse leukosialin (CD43), a T lymphocyte mucin without introns in the coding sequence. Cyster J, et al. Eur J Immunol, 1990 Apr. PMID 2347365
  2. Genetic nomenclature for loci controlling surface antigens of mouse hemopoietic cells. Morse HC 3rd. J Immunol, 1992 Nov 15. PMID 1431091
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033583.1 RNA Sequence

    Status: INFERRED

    Source sequence(s)
    AC136003
    Related
    ENSMUST00000230085.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    90775599..90782679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001463.4: Suppressed sequence

    Description
    NG_001463.4: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

  2. NG_020223.1: Suppressed sequence

    Description
    NG_020223.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein Strain
Heading Accession and Version

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