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Larp4 La ribonucleoprotein 4 [ Mus musculus (house mouse) ]

Gene ID: 207214, updated on 5-Mar-2024

Summary

Official Symbol
Larp4provided by MGI
Official Full Name
La ribonucleoprotein 4provided by MGI
Primary source
MGI:MGI:2443114
See related
Ensembl:ENSMUSG00000023025 AllianceGenome:MGI:2443114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DXErtd793; DXErtd793e
Summary
Predicted to enable mRNA 3'-UTR binding activity and poly(A) binding activity. Predicted to be involved in cytoskeleton organization; positive regulation of translation; and regulation of cell morphogenesis. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of cytosolic small ribosomal subunit and polysome. Predicted to be active in cytoplasmic stress granule and cytosol. Orthologous to human LARP4 (La ribonucleoprotein 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 11.6), CNS E11.5 (RPKM 5.7) and 28 other tissues See more
Orthologs
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Genomic context

See Larp4 in Genome Data Viewer
Location:
15 F1; 15 56.13 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (99867946..99914239)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (99970065..100016358)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700121M21 gene Neighboring gene ribosomal protein S10 pseudogene Neighboring gene family with sequence similarity 186, member A Neighboring gene predicted gene, 21917 Neighboring gene RIKEN cDNA 2310068J16 gene Neighboring gene STARR-positive B cell enhancer ABC_E3157 Neighboring gene STARR-seq mESC enhancer starr_39735 Neighboring gene STARR-positive B cell enhancer mm9_chr15:99890852-99891153 Neighboring gene disco interacting protein 2 homolog B Neighboring gene STARR-seq mESC enhancer starr_39737 Neighboring gene STARR-seq mESC enhancer starr_39738 Neighboring gene STARR-seq mESC enhancer starr_39739 Neighboring gene STARR-seq mESC enhancer starr_39742 Neighboring gene activating transcription factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • C530046N12, D330037H05Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables poly(A) binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoskeleton organization ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of translation ISO
Inferred from Sequence Orthology
more info
 
involved_in post-transcriptional regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell morphogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasmic stress granule IBA
Inferred from Biological aspect of Ancestor
more info
 
colocalizes_with cytoplasmic stress granule ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
la-related protein 4
Names
La ribonucleoprotein domain family, member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024526.2NP_001019697.2  la-related protein 4 isoform 1

    See identical proteins and their annotated locations for NP_001019697.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform (1).
    Source sequence(s)
    AC133868, AK049756, AK139909, BP757308, CJ080411
    Consensus CDS
    CCDS37208.1
    UniProtKB/Swiss-Prot
    Q3UR69, Q8BWW4
    UniProtKB/TrEMBL
    G3X9Q6
    Related
    ENSMUSP00000097780.3, ENSMUST00000100206.4
    Conserved Domains (2) summary
    cd08035
    Location:116190
    LARP_4; La RNA-binding domain of La-related protein 4
    cd12707
    Location:195271
    RRM_LARP4; RNA recognition motif in vertebrate La-related protein 4 (LARP4)
  2. NM_001080948.2NP_001074417.1  la-related protein 4 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5'-terminal exon, initiates translation at an alternate start codon, and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AI853685, AK052358, AK139636, AK139909, AK141743, BE951991, CJ083603
    Consensus CDS
    CCDS49730.1
    UniProtKB/Swiss-Prot
    Q3UR69, Q8BWW4
    UniProtKB/TrEMBL
    E9Q066
    Related
    ENSMUSP00000086964.6, ENSMUST00000057632.16
    Conserved Domains (2) summary
    cd08035
    Location:115189
    LARP_4; La RNA-binding domain of La-related protein 4
    cd12707
    Location:194270
    RRM_LARP4; RNA recognition motif in vertebrate La-related protein 4 (LARP4)
  3. NM_001284521.1NP_001271450.1  la-related protein 4 isoform 3

    See identical proteins and their annotated locations for NP_001271450.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in its 5' UTR and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AI853685, AK052358, AK139636, AK139909, AK141743, BE951991, CJ080411
    Consensus CDS
    CCDS88842.1
    UniProtKB/TrEMBL
    A0A2R8VKL5, Q3UT02
    Related
    ENSMUSP00000155661.2, ENSMUST00000231160.2
    Conserved Domains (3) summary
    cd08035
    Location:57131
    LARP_4; La RNA-binding domain of La-related protein 4
    PHA03247
    Location:260657
    PHA03247; large tegument protein UL36; Provisional
    cd12707
    Location:136212
    RRM_LARP4; RNA recognition motif in vertebrate La-related protein 4 (LARP4)
  4. NM_001284522.1NP_001271451.1  la-related protein 4 isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains an alternate 5'-terminal exon and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (4) has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AI853685, AK052358, AK139636, AK139909, AK141743, BE951991, CJ083603
    UniProtKB/Swiss-Prot
    Q3UR69, Q8BWW4
    Conserved Domains (2) summary
    cd08035
    Location:114188
    LARP_4; La RNA-binding domain of La-related protein 4
    cd12707
    Location:193269
    RRM_LARP4; RNA recognition motif in vertebrate La-related protein 4 (LARP4)
  5. NM_001284523.1NP_001271452.1  la-related protein 4 isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (5) is longer, compared to isoform 1.
    Source sequence(s)
    AI853685, AK052358, AK139636, AK139909, AK141743, BE951991, CJ080411
    UniProtKB/Swiss-Prot
    Q3UR69, Q8BWW4
    Related
    ENSMUSP00000155601.2, ENSMUST00000230956.2
    Conserved Domains (2) summary
    cd08035
    Location:117191
    LARP_4; La RNA-binding domain of La-related protein 4
    cd12707
    Location:196272
    RRM_LARP4; RNA recognition motif in vertebrate La-related protein 4 (LARP4)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    99867946..99914239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006520675.1XP_006520738.1  la-related protein 4 isoform X1

    See identical proteins and their annotated locations for XP_006520738.1

    UniProtKB/TrEMBL
    A0A2R8VKL5, Q3UT02
    Conserved Domains (3) summary
    cd08035
    Location:57131
    LARP_4; La RNA-binding domain of La-related protein 4
    PHA03247
    Location:260657
    PHA03247; large tegument protein UL36; Provisional
    cd12707
    Location:136212
    RRM_LARP4; RNA recognition motif in vertebrate La-related protein 4 (LARP4)
  2. XM_017316524.1XP_017172013.1  la-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A2R8VKL5, Q3UT02
    Conserved Domains (3) summary
    cd08035
    Location:57131
    LARP_4; La RNA-binding domain of La-related protein 4
    PHA03247
    Location:260657
    PHA03247; large tegument protein UL36; Provisional
    cd12707
    Location:136212
    RRM_LARP4; RNA recognition motif in vertebrate La-related protein 4 (LARP4)