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Cetn4 centrin 4 [ Mus musculus (house mouse) ]

Gene ID: 207175, updated on 10-Oct-2019

Summary

Official Symbol
Cetn4provided by MGI
Official Full Name
centrin 4provided by MGI
Primary source
MGI:MGI:2677454
See related
Ensembl:ENSMUSG00000045031
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 40.4), frontal lobe adult (RPKM 2.2) and 1 other tissue See more

Genomic context

See Cetn4 in Genome Data Viewer
Location:
3; 3 B
Exon count:
5
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (37308627..37312446, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (37207549..37211368, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene 12532 Neighboring gene predicted gene, 36168 Neighboring gene interleukin 21 Neighboring gene 28S ribosomal protein S33, mitochondrial pseudogene Neighboring gene Bardet-Biedl syndrome 12 (human) Neighboring gene fibroblast growth factor 2, opposite strand Neighboring gene fibroblast growth factor 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Clone Names

  • MGC107235

Gene Ontology Provided by MGI

Function Evidence Code Pubs
G-protein beta/gamma-subunit complex binding IDA
Inferred from Direct Assay
more info
PubMed 
calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
heterotrimeric G-protein binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
centriole replication IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
centriole IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
centriole IDA
Inferred from Direct Assay
more info
PubMed 
centrosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
centrin-4
Names
centrin4
cetn4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145825.2NP_665824.1  centrin-4

    See identical proteins and their annotated locations for NP_665824.1

    Status: PROVISIONAL

    Source sequence(s)
    AL691478
    Consensus CDS
    CCDS17318.1
    UniProtKB/Swiss-Prot
    Q8K4K1
    Related
    ENSMUSP00000100020.4, ENSMUST00000102955.10
    Conserved Domains (1) summary
    cl25352
    Location:13168
    EFh_PEF; The penta-EF hand (PEF) family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p6 C57BL/6J

    Range
    37308627..37312446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p6 129S1/SvImJ

Genomic

  1. NT_039248.1 Reference GRCm38.p6 129S1/SvImJ

    Range
    205314..209016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p6 NOD/MrkTac

Genomic

  1. NT_039252.1 Reference GRCm38.p6 NOD/MrkTac

    Range
    246191..249893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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