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SFTA1P surfactant associated 1, lncRNA [ Homo sapiens (human) ]

Gene ID: 207107, updated on 17-Jun-2024

Summary

Official Symbol
SFTA1Pprovided by HGNC
Official Full Name
surfactant associated 1, lncRNAprovided by HGNC
Primary source
HGNC:HGNC:18383
See related
Ensembl:ENSG00000225383 AllianceGenome:HGNC:18383
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SFTPF
Expression
Biased expression in lung (RPKM 34.1) and fat (RPKM 4.4) See more
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Genomic context

See SFTA1P in Genome Data Viewer
Location:
10p14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (10784439..10794914, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (10794698..10805204, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (10826402..10836877, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene CELF2 divergent transript Neighboring gene NANOG hESC enhancer GRCh37_chr10:10570129-10570630 Neighboring gene CUGBP Elav-like family member 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2120 Neighboring gene NANOG hESC enhancer GRCh37_chr10:10631025-10631575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2991 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:10693065-10693682 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:10738713-10739255 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:10809675-10809828 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:10839838-10840532 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:10840533-10841226 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:10846798-10847997 Neighboring gene NANOG hESC enhancer GRCh37_chr10:10862511-10863057 Neighboring gene ORMDL1 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:10872688-10873887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2122 Neighboring gene long intergenic non-protein coding RNA 710 Neighboring gene uncharacterized LOC124902376

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
GWAS of dental caries patterns in the permanent dentition.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • surfactant associated 1, pseudogene
  • surfactant associated protein F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027082.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AY102069
    Related
    ENST00000446372.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    10784439..10794914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    10794698..10805204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)