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Snapin SNAP-associated protein [ Mus musculus (house mouse) ]

Gene ID: 20615, updated on 5-Aug-2018

Summary

Official Symbol
Snapinprovided by MGI
Official Full Name
SNAP-associated proteinprovided by MGI
Primary source
MGI:MGI:1333745
See related
Ensembl:ENSMUSG00000001018 Vega:OTTMUSG00000022106
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
25kDa; Snapap; Bloc1s7; AA407989; AV026596; Snap25bp
Expression
Ubiquitous expression in bladder adult (RPKM 30.5), heart adult (RPKM 20.4) and 28 other tissues See more
Orthologs

Genomic context

See Snapin in Genome Data Viewer
Location:
3; 3 F1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (90488026..90491013, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (90291948..90294935, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene natriuretic peptide receptor 1 Neighboring gene nuclear encoded tRNA methionine 11 (anticodon CAT) Neighboring gene interleukin enhancer binding factor 2 Neighboring gene chromatin target of PRMT1 Neighboring gene S100 calcium binding protein A1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
SNARE binding ISO
Inferred from Sequence Orthology
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
anterograde axonal transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
anterograde synaptic vesicle transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
autophagosome maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
calcium ion regulated exocytosis TAS
Traceable Author Statement
more info
PubMed 
cellular protein-containing complex localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
chemical synaptic transmission IMP
Inferred from Mutant Phenotype
more info
PubMed 
endosome to lysosome transport ISO
Inferred from Sequence Orthology
more info
 
exocytosis IEA
Inferred from Electronic Annotation
more info
 
intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
late endosome to lysosome transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
lysosomal lumen acidification IMP
Inferred from Mutant Phenotype
more info
PubMed 
lysosome localization ISO
Inferred from Sequence Orthology
more info
 
lysosome organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of neuron projection development IGI
Inferred from Genetic Interaction
more info
PubMed 
neuron projection development NAS
Non-traceable Author Statement
more info
PubMed 
protein maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of protein binding ISO
Inferred from Sequence Orthology
more info
 
retrograde axonal transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic vesicle exocytosis ISO
Inferred from Sequence Orthology
more info
PubMed 
synaptic vesicle fusion to presynaptic active zone membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic vesicle maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic vesicle transport ISO
Inferred from Sequence Orthology
more info
 
terminal button organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
BLOC-1 complex IDA
Inferred from Direct Assay
more info
PubMed 
BLOC-1 complex ISO
Inferred from Sequence Orthology
more info
 
BORC complex ISO
Inferred from Sequence Orthology
more info
 
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
lysosome IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
secretory granule ISO
Inferred from Sequence Orthology
more info
 
synapse ISO
Inferred from Sequence Orthology
more info
PubMed 
synaptic vesicle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
SNARE-associated protein Snapin
Names
BLOC-1 subunit 7
biogenesis of lysosome-related organelles complex 1 subunit 7
synaptosomal-associated protein 25 binding protein
synaptosomal-associated protein, 25 kDa, binding protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133854.3NP_598615.1  SNARE-associated protein Snapin

    See identical proteins and their annotated locations for NP_598615.1

    Status: VALIDATED

    Source sequence(s)
    AC160552, AK048007, AK050151
    Consensus CDS
    CCDS17531.1
    UniProtKB/Swiss-Prot
    Q9Z266
    Related
    ENSMUSP00000122090.1, OTTMUSP00000024888, ENSMUST00000149884.1, OTTMUST00000052477
    Conserved Domains (1) summary
    pfam14712
    Location:24110
    Snapin_Pallidin; Snapin/Pallidin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

    Range
    90488026..90491013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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