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FAM219A family with sequence similarity 219 member A [ Homo sapiens (human) ]

Gene ID: 203259, updated on 23-Nov-2021

Summary

Official Symbol
FAM219Aprovided by HGNC
Official Full Name
family with sequence similarity 219 member Aprovided by HGNC
Primary source
HGNC:HGNC:19920
See related
Ensembl:ENSG00000164970
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf25
Summary
The protein encoded by this gene has homologs that have been identified in mouse, macaque, etc organisms. Multiple alternatively spliced transcript variants that encode different protein isoforms have been described for this gene. [provided by RefSeq, Dec 2010]
Expression
Broad expression in brain (RPKM 9.8), fat (RPKM 2.5) and 21 other tissues See more
Orthologs
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Genomic context

See FAM219A in Genome Data Viewer
Location:
9p13.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (34398184..34458570, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (34398182..34458568, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene myogenesis regulating glycosidase (putative) Neighboring gene chromosome 9 open reading frame 24 Neighboring gene Sharpr-MPRA regulatory region 4178 Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene RN7SK pseudogene 24 Neighboring gene Sharpr-MPRA regulatory regions 5304 and 15183

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ39031

General protein information

Preferred Names
protein FAM219A
Names
uncharacterized protein C9orf25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027971.1 RefSeqGene

    Range
    5001..65387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001184940.2NP_001171869.1  protein FAM219A isoform 1

    See identical proteins and their annotated locations for NP_001171869.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and it encodes the longest protein (isoform 1).
    Source sequence(s)
    AK096350, AK299882, AL356494, BC025348
    Consensus CDS
    CCDS55304.1
    UniProtKB/Swiss-Prot
    Q8IW50
    Related
    ENSP00000499069.1, ENST00000651358.1
    Conserved Domains (1) summary
    pfam15260
    Location:54182
    FAM219A; Protein family FAM219A
  2. NM_001184941.2NP_001171870.1  protein FAM219A isoform 2

    See identical proteins and their annotated locations for NP_001171870.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different splice site in the coding region, compared to variant 1. The resulting protein (isoform 2) lacks an internal aa when it is compared to isoform 1.
    Source sequence(s)
    AK096350, AK299882, AL356494, BC025348
    UniProtKB/Swiss-Prot
    Q8IW50
    Related
    ENSP00000368382.1, ENST00000379089.5
    Conserved Domains (1) summary
    pfam15260
    Location:54181
    FAM219A; Protein family FAM219A
  3. NM_001184942.2NP_001171871.1  protein FAM219A isoform 3

    See identical proteins and their annotated locations for NP_001171871.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses two different splice sites in the coding region, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1.
    Source sequence(s)
    AK294054, AL356494, BC025348
    UniProtKB/Swiss-Prot
    Q8IW50
    Related
    ENSP00000368371.1, ENST00000379080.5
    Conserved Domains (1) summary
    pfam15260
    Location:43170
    FAM219A; Protein family FAM219A
  4. NM_001184943.2NP_001171872.1  protein FAM219A isoform 5

    See identical proteins and their annotated locations for NP_001171872.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses two different splice sites in the coding region, compared to variant 1. The resulting protein (isoform 5) lacks a segment in the N-terminal region and an internal aa when it is compared to isoform 1.
    Source sequence(s)
    AK096350, AL356494, BC025348, DA110626
    UniProtKB/Swiss-Prot
    Q8IW50
    Related
    ENSP00000368380.1, ENST00000379087.5
    Conserved Domains (1) summary
    pfam15260
    Location:37164
    FAM219A; Protein family FAM219A
  5. NM_001184945.2NP_001171874.1  protein FAM219A isoform 7

    See identical proteins and their annotated locations for NP_001171874.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) uses three different splice sites in the coding region, compared to variant 1. The resulting protein (isoform 7) lacks two segments and an internal aa when it is compared to isoform 1.
    Source sequence(s)
    AK294054, AL356494, BC025348, BC041009
    UniProtKB/Swiss-Prot
    Q8IW50
    Related
    ENSP00000368372.1, ENST00000379081.5
    Conserved Domains (1) summary
    pfam15260
    Location:26153
    FAM219A; Protein family FAM219A
  6. NM_147202.2NP_671735.1  protein FAM219A isoform 4

    See identical proteins and their annotated locations for NP_671735.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses a different splice site in the coding region, compared to variant 1. The resulting protein (isoform 4) lacks an internal segment when it is compared to isoform 1.
    Source sequence(s)
    AK096350, AL356494, BC025348
    Consensus CDS
    CCDS6556.1
    UniProtKB/Swiss-Prot
    Q8IW50
    Related
    ENSP00000297620.4, ENST00000297620.8
    Conserved Domains (1) summary
    pfam15260
    Location:37165
    FAM219A; Protein family FAM219A

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    34398184..34458570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001184944.1: Suppressed sequence

    Description
    NM_001184944.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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