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ERICH5 glutamate rich 5 [ Homo sapiens (human) ]

Gene ID: 203111, updated on 10-Dec-2024

Summary

Official Symbol
ERICH5provided by HGNC
Official Full Name
glutamate rich 5provided by HGNC
Primary source
HGNC:HGNC:26823
See related
Ensembl:ENSG00000177459 MIM:620895; AllianceGenome:HGNC:26823
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C8orf47
Expression
Broad expression in gall bladder (RPKM 6.0), stomach (RPKM 4.0) and 16 other tissues See more
Orthologs
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Genomic context

See ERICH5 in Genome Data Viewer
Location:
8q22.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (98064568..98093609)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (99190059..99219104)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (99076796..99105837)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27672 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:99057921-99058857 Neighboring gene small nucleolar RNA, H/ACA box 72 Neighboring gene ribosomal protein L30 Neighboring gene RNA, U6 small nuclear 703, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19393 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27675 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19394 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27676 Neighboring gene reactive intermediate imine deaminase A homolog Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27678 Neighboring gene POP1 homolog, ribonuclease P/MRP subunit Neighboring gene tRNA-undetermined (NNN) 2-1

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170806.2NP_001164277.1  glutamate-rich protein 5 isoform 2

    See identical proteins and their annotated locations for NP_001164277.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
    Source sequence(s)
    AI697720, AK096872
    Consensus CDS
    CCDS55266.1
    UniProtKB/Swiss-Prot
    Q6P6B1
    Related
    ENSP00000440297.1, ENST00000545282.1
  2. NM_173549.3NP_775820.2  glutamate-rich protein 5 isoform 1

    See identical proteins and their annotated locations for NP_775820.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK096872, BC062359
    Consensus CDS
    CCDS34929.1
    UniProtKB/Swiss-Prot
    G3V1K4, Q6P6B1, Q8N1L8
    Related
    ENSP00000315614.3, ENST00000318528.8
    Conserved Domains (1) summary
    pfam15140
    Location:94267
    DUF4573; Domain of unknown function (DUF4573)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    98064568..98093609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    99190059..99219104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)