Format

Send to:

Choose Destination

TCTE1 t-complex-associated-testis-expressed 1 [ Homo sapiens (human) ]

Gene ID: 202500, updated on 1-Jun-2020

Summary

Official Symbol
TCTE1provided by HGNC
Official Full Name
t-complex-associated-testis-expressed 1provided by HGNC
Primary source
HGNC:HGNC:11693
See related
Ensembl:ENSG00000146221 MIM:186975
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DRC5; D6S46; FAP155
Expression
Restricted expression toward testis (RPKM 12.5) See more
Orthologs

Genomic context

See TCTE1 in Genome Data Viewer
Location:
6p21.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (44278734..44297805, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (44247248..44265458, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member B2 Neighboring gene microRNA 4647 Neighboring gene NFKB inhibitor epsilon Neighboring gene transmembrane protein 151B Neighboring gene alanyl-tRNA synthetase 2, mitochondrial Neighboring gene spermatogenesis associated serine rich 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Clone Names

  • FLJ50041, MGC33600

Gene Ontology Provided by GOA

Process Evidence Code Pubs
flagellated sperm motility ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
sperm flagellum ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
dynein regulatory complex subunit 5
Names
T-complex-associated testis-expressed protein 1
tcte-1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182539.4NP_872345.2  dynein regulatory complex subunit 5

    See identical proteins and their annotated locations for NP_872345.2

    Status: VALIDATED

    Source sequence(s)
    AA732744, AK301825, AL353588
    Consensus CDS
    CCDS4910.1
    UniProtKB/Swiss-Prot
    Q5JU00
    Related
    ENSP00000360560.4, ENST00000371505.5
    Conserved Domains (2) summary
    cd00116
    Location:179489
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:309335
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    44278734..44297805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006715009.3XP_006715072.1  dynein regulatory complex subunit 5 isoform X3

    See identical proteins and their annotated locations for XP_006715072.1

    Conserved Domains (3) summary
    COG4886
    Location:185354
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:80390
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:210236
    LRR_RI; leucine-rich repeat [structural motif]
  2. XM_024446347.1XP_024302115.1  dynein regulatory complex subunit 5 isoform X4

    Conserved Domains (1) summary
    cl26161
    Location:229339
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
  3. XM_011514340.1XP_011512642.1  dynein regulatory complex subunit 5 isoform X4

    Conserved Domains (1) summary
    cl26161
    Location:229339
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
  4. XM_005248873.2XP_005248930.1  dynein regulatory complex subunit 5 isoform X2

    Conserved Domains (1) summary
    cd00116
    Location:179402
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
  5. XM_005248872.1XP_005248929.1  dynein regulatory complex subunit 5 isoform X1

    See identical proteins and their annotated locations for XP_005248929.1

    UniProtKB/Swiss-Prot
    Q5JU00
    Conserved Domains (2) summary
    cd00116
    Location:179489
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:309335
    LRR_RI; leucine-rich repeat [structural motif]
  6. XM_011514338.2XP_011512640.1  dynein regulatory complex subunit 5 isoform X1

    See identical proteins and their annotated locations for XP_011512640.1

    UniProtKB/Swiss-Prot
    Q5JU00
    Conserved Domains (2) summary
    cd00116
    Location:179489
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:309335
    LRR_RI; leucine-rich repeat [structural motif]
  7. XM_011514336.3XP_011512638.1  dynein regulatory complex subunit 5 isoform X1

    See identical proteins and their annotated locations for XP_011512638.1

    UniProtKB/Swiss-Prot
    Q5JU00
    Conserved Domains (2) summary
    cd00116
    Location:179489
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:309335
    LRR_RI; leucine-rich repeat [structural motif]
  8. XM_005248874.2XP_005248931.1  dynein regulatory complex subunit 5 isoform X3

    See identical proteins and their annotated locations for XP_005248931.1

    Conserved Domains (3) summary
    COG4886
    Location:185354
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:80390
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:210236
    LRR_RI; leucine-rich repeat [structural motif]
  9. XM_011514339.2XP_011512641.1  dynein regulatory complex subunit 5 isoform X3

    See identical proteins and their annotated locations for XP_011512641.1

    Conserved Domains (3) summary
    COG4886
    Location:185354
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:80390
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:210236
    LRR_RI; leucine-rich repeat [structural motif]
Support Center