Format

Send to:

Choose Destination

LINC01554 long intergenic non-protein coding RNA 1554 [ Homo sapiens (human) ]

Gene ID: 202299, updated on 10-Dec-2019

Summary

Official Symbol
LINC01554provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1554provided by HGNC
Primary source
HGNC:HGNC:24687
See related
Ensembl:ENSG00000236882
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FIS; C5orf27
Expression
Biased expression in liver (RPKM 18.4), salivary gland (RPKM 2.6) and 2 other tissues See more

Genomic context

See LINC01554 in Genome Data Viewer
Location:
5q15
Exon count:
3
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (95852232..95860133)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (95187936..95195837)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724720 Neighboring gene GGCT pseudogene 1 Neighboring gene uncharacterized LOC105379091 Neighboring gene elongation factor for RNA polymerase II 2 Neighboring gene Sharpr-MPRA regulatory region 10583

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK314737, AW206457, AY168789
    Related
    ENST00000357880.8

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    95852232..95860133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175616.2: Suppressed sequence

    Description
    NM_175616.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Support Center