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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001297696.2 → NP_001284625.1 coiled-coil domain-containing protein 125 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has an alternate 5' UTR exon and an alternate splice site in the 5' coding region, and lacks an internal exon in the 3' coding region, which results in a frameshift, compared to variant 1. The resulting isoform (2) lacks an internal aa in the N-terminal region and has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC145132, AI141520, AK299871, BC108715
- UniProtKB/TrEMBL
-
B4DSR1
- Conserved Domains (1) summary
-
- TIGR02168
Location:110 → 256
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
NM_001297697.2 → NP_001284626.1 coiled-coil domain-containing protein 125 isoform 3
See identical proteins and their annotated locations for NP_001284626.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has an alternate 5' UTR exon, lacks an internal segment and has an alternate splice site in the 5' region, compared to variant 1. The translation initiation is at a downstream AUG start codon, and the resulting isoform (3) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC145132, AI141520, AK299871, BC108715, BC113749
- Consensus CDS
-
CCDS75255.1
- UniProtKB/Swiss-Prot
-
Q86Z20
- UniProtKB/TrEMBL
- B4DSR1, Q2HJ12
- Related
- ENSP00000426795.1, ENST00000511257.1
- Conserved Domains (1) summary
-
- pfam09730
Location:2 → 139
- BicD; Microtubule-associated protein Bicaudal-D
-
NM_176816.5 → NP_789786.2 coiled-coil domain-containing protein 125 isoform 1
See identical proteins and their annotated locations for NP_789786.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AB024691, AC145132, AI141520, BC108715
- Consensus CDS
-
CCDS4000.1
- UniProtKB/Swiss-Prot
-
Q86Z20
- Related
- ENSP00000379754.2, ENST00000396496.7
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p13 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p13 Primary Assembly
- Range
-
69273087..69333070 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011543258.2 → XP_011541560.1 coiled-coil domain-containing protein 125 isoform X5
See identical proteins and their annotated locations for XP_011541560.1
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_017009207.1 → XP_016864696.1 coiled-coil domain-containing protein 125 isoform X7
-
XM_017009206.2 → XP_016864695.1 coiled-coil domain-containing protein 125 isoform X2
- Conserved Domains (1) summary
-
- cl25732
Location:110 → 256
- SMC_N; RecF/RecN/SMC N terminal domain
-
XM_017009209.1 → XP_016864698.1 coiled-coil domain-containing protein 125 isoform X14
- Conserved Domains (1) summary
-
- TIGR02168
Location:110 → 256
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_011543259.2 → XP_011541561.1 coiled-coil domain-containing protein 125 isoform X6
See identical proteins and their annotated locations for XP_011541561.1
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_005248458.5 → XP_005248515.1 coiled-coil domain-containing protein 125 isoform X1
See identical proteins and their annotated locations for XP_005248515.1
- UniProtKB/Swiss-Prot
-
Q86Z20
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_024454396.1 → XP_024310164.1 coiled-coil domain-containing protein 125 isoform X2
- Conserved Domains (1) summary
-
- cl25732
Location:110 → 256
- SMC_N; RecF/RecN/SMC N terminal domain
-
XM_006714570.4 → XP_006714633.1 coiled-coil domain-containing protein 125 isoform X9
See identical proteins and their annotated locations for XP_006714633.1
- Conserved Domains (1) summary
-
- TIGR02168
Location:34 → 180
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_005248459.5 → XP_005248516.1 coiled-coil domain-containing protein 125 isoform X2
See identical proteins and their annotated locations for XP_005248516.1
- Conserved Domains (1) summary
-
- cl25732
Location:110 → 256
- SMC_N; RecF/RecN/SMC N terminal domain
-
XM_011543256.3 → XP_011541558.1 coiled-coil domain-containing protein 125 isoform X1
See identical proteins and their annotated locations for XP_011541558.1
- UniProtKB/Swiss-Prot
-
Q86Z20
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_011543255.3 → XP_011541557.1 coiled-coil domain-containing protein 125 isoform X1
See identical proteins and their annotated locations for XP_011541557.1
- UniProtKB/Swiss-Prot
-
Q86Z20
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_017009208.2 → XP_016864697.1 coiled-coil domain-containing protein 125 isoform X8
-
XM_005248461.4 → XP_005248518.1 coiled-coil domain-containing protein 125 isoform X10
See identical proteins and their annotated locations for XP_005248518.1
-
XM_005248463.4 → XP_005248520.1 coiled-coil domain-containing protein 125 isoform X11
See identical proteins and their annotated locations for XP_005248520.1
- UniProtKB/Swiss-Prot
-
Q86Z20
-
XM_005248464.3 → XP_005248521.1 coiled-coil domain-containing protein 125 isoform X13
See identical proteins and their annotated locations for XP_005248521.1
- Related
- ENSP00000372865.2, ENST00000383374.6
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_024454397.1 → XP_024310165.1 coiled-coil domain-containing protein 125 isoform X12
-
XM_011543257.3 → XP_011541559.1 coiled-coil domain-containing protein 125 isoform X4
See identical proteins and their annotated locations for XP_011541559.1
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 312
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_006714569.4 → XP_006714632.1 coiled-coil domain-containing protein 125 isoform X3
See identical proteins and their annotated locations for XP_006714632.1
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_017009210.2 → XP_016864699.1 coiled-coil domain-containing protein 125 isoform X16
-
XM_017009211.2 → XP_016864700.1 coiled-coil domain-containing protein 125 isoform X17
-
XM_011543260.2 → XP_011541562.1 coiled-coil domain-containing protein 125 isoform X15
See identical proteins and their annotated locations for XP_011541562.1
- Conserved Domains (1) summary
-
- TIGR02168
Location:111 → 257
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
RNA
-
XR_948241.2 RNA Sequence
Reference GRCh38.p13 ALT_REF_LOCI_1
Genomic
-
NW_003315917.2 Reference GRCh38.p13 ALT_REF_LOCI_1
- Range
-
63350..115915 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)