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Saa2 serum amyloid A 2 [ Mus musculus (house mouse) ]

Gene ID: 20209, updated on 12-Nov-2019

Summary

Official Symbol
Saa2provided by MGI
Official Full Name
serum amyloid A 2provided by MGI
Primary source
MGI:MGI:98222
See related
Ensembl:ENSMUSG00000057465
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Saa1; Saa-2; AW111173
Expression
Biased expression in colon adult (RPKM 13.9), large intestine adult (RPKM 8.3) and 1 other tissue See more

Genomic context

See Saa2 in Genome Data Viewer
Location:
7 B3; 7 30.56 cM
Exon count:
5
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (46751833..46754314)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (54007203..54009684)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene serum amyloid A, pseudogene Neighboring gene serum amyloid A 1 Neighboring gene HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 Neighboring gene general transcription factor II H, polypeptide 1 Neighboring gene Rap1A-retro1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
G protein-coupled receptor binding ISO
Inferred from Sequence Orthology
more info
 
chemoattractant activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acute-phase response IEA
Inferred from Electronic Annotation
more info
 
cell chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
response to stilbenoid IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
cytoplasmic microtubule ISO
Inferred from Sequence Orthology
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
serum amyloid A-2 protein
Names
serum amyloid A 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357491.1NP_001344420.1  serum amyloid A-2 protein preproprotein

    Status: VALIDATED

    Source sequence(s)
    AC090122
    Consensus CDS
    CCDS21285.1
    Related
    ENSMUSP00000075365.2, ENSMUST00000075982.3
    Conserved Domains (1) summary
    smart00197
    Location:21122
    SAA; Serum amyloid A proteins
  2. NM_011314.2NP_035444.1  serum amyloid A-2 protein preproprotein

    See identical proteins and their annotated locations for NP_035444.1

    Status: VALIDATED

    Source sequence(s)
    AC090122
    Consensus CDS
    CCDS21285.1
    UniProtKB/Swiss-Prot
    P05367
    Related
    ENSMUSP00000147751.1, ENSMUST00000210769.1
    Conserved Domains (1) summary
    smart00197
    Location:21122
    SAA; Serum amyloid A proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p6 C57BL/6J

    Range
    46751833..46754314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322059.2XP_017177548.1  serum amyloid A-2 protein isoform X2

  2. XM_011250828.1XP_011249130.1  serum amyloid A-2 protein isoform X1

    Conserved Domains (1) summary
    smart00197
    Location:56157
    SAA; Serum amyloid A proteins
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