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TAPT1-AS1 TAPT1 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 202020, updated on 1-Jun-2020

Summary

Official Symbol
TAPT1-AS1provided by HGNC
Official Full Name
TAPT1 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:26832
See related
Ensembl:ENSG00000263327
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in skin (RPKM 2.1), colon (RPKM 1.8) and 25 other tissues See more

Genomic context

See TAPT1-AS1 in Genome Data Viewer
Location:
4p15.32
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (16226663..16258187)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (16228286..16259810)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374502 Neighboring gene uncharacterized LOC107986187 Neighboring gene transmembrane anterior posterior transformation 1 Neighboring gene ribosomal protein S21 pseudogene 4 Neighboring gene fibroblast growth factor binding protein 1 pseudogene Neighboring gene zinc finger E-box binding homeobox 2 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027696.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC006427, AC110088
    Related
    ENST00000570786.1
  2. NR_027697.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3'-most exon compared to variant 1. This results in a shorter variant (2) compared to variant 1.
    Source sequence(s)
    AC006427, AC110088

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    16226663..16258187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152684.1: Suppressed sequence

    Description
    NM_152684.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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