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LINC00504 long intergenic non-protein coding RNA 504 [ Homo sapiens (human) ]

Gene ID: 201853, updated on 17-Jun-2024

Summary

Official Symbol
LINC00504provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 504provided by HGNC
Primary source
HGNC:HGNC:43555
See related
Ensembl:ENSG00000248360 AllianceGenome:HGNC:43555
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00504 in Genome Data Viewer
Location:
4p15.33
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (14470465..14888169, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (14450240..14868074, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (14472089..14889793, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21329 Neighboring gene uncharacterized LOC124900670 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14171749-14172320 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:14173379-14174044 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14174045-14174710 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:14177103-14177745 Neighboring gene Sharpr-MPRA regulatory region 1402 Neighboring gene Sharpr-MPRA regulatory region 15154 Neighboring gene Kruppel like factor 17 pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14228109-14228913 Neighboring gene VISTA enhancer hs842 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:14337797-14338996 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14366397-14366955 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14404596-14405242 Neighboring gene NANOG hESC enhancer GRCh37_chr4:14412074-14412623 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14479536-14480036 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14480037-14480537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14482730-14483287 Neighboring gene uncharacterized LOC105374496 Neighboring gene MT-ND2 pseudogene 31 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14667012-14667571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21331 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:14857565-14858764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21334 Neighboring gene uncharacterized LOC105374498 Neighboring gene CPEB2 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21335 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15294 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:15005985-15006551 Neighboring gene C1QTNF7 antisense RNA 1 Neighboring gene cytoplasmic polyadenylation element binding protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126435.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093777, AC093846, AC134620
    Related
    ENST00000505089.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    14470465..14888169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    14450240..14868074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)