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ZBTB7C zinc finger and BTB domain containing 7C [ Homo sapiens (human) ]

Gene ID: 201501, updated on 5-Mar-2024

Summary

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Official Symbol
ZBTB7Cprovided by HGNC
Official Full Name
zinc finger and BTB domain containing 7Cprovided by HGNC
Primary source
HGNC:HGNC:31700
See related
Ensembl:ENSG00000184828 MIM:616591; AllianceGenome:HGNC:31700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
APM1; APM-1; ZBTB36; ZNF857C
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of cell population proliferation. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in esophagus (RPKM 8.6), skin (RPKM 4.3) and 18 other tissues See more
Orthologs
mouse all
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Genomic context

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Location:
18q21.1
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (48026672..48412585, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (48217704..48603693, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (45553043..45938956, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904297 Neighboring gene uncharacterized LOC105372101 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:45494112-45494840 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:45499951-45500451 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:45529319-45530518 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:45534013-45534926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45580577-45581077 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:45605776-45606698 Neighboring gene Sharpr-MPRA regulatory region 9251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:45654098-45654696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45665409-45665908 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45698538-45699038 Neighboring gene ZBTB7C antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45712074-45712592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45712593-45713110 Neighboring gene RNA, U6 small nuclear 708, pseudogene Neighboring gene ZBTB7C antisense RNA 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45819913-45820696 Neighboring gene Sharpr-MPRA regulatory region 937 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45822263-45823044 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:45844425-45844926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45861441-45861941 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45860940-45861440 Neighboring gene uncharacterized LOC124904352 Neighboring gene uncharacterized LOC124904353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45934035-45934654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45934655-45935272 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9432 Neighboring gene Sharpr-MPRA regulatory region 5458 Neighboring gene RNA, 5S ribosomal pseudogene 456 Neighboring gene RNA polymerase III subunit G pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The prognostic and immunological effects of ZBTB7C across cancers: friend or foe? Chen X, et al. Aging (Albany NY), 2021 May 4. PMID 33946045, Free PMC Article
  2. Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data. Prokopenko D, et al. Sci Rep, 2020 Mar 19. PMID 32193444, Free PMC Article
  3. Characterization of a novel human papillomavirus DNA in the cervical carcinoma cell line ME180. Reuter S, et al. J Virol, 1991 Oct. PMID 1716694, Free PMC Article
  4. Kr-POK (ZBTB7c) regulates cancer cell proliferation through glutamine metabolism. Hur MW, et al. Biochim Biophys Acta Gene Regul Mech, 2017 Aug. PMID 28571744
  5. Integrative Mouse and Human Studies Implicate ANGPT1 and ZBTB7C as Susceptibility Genes to Ischemic Injury. Du R, et al. Stroke, 2015 Dec. PMID 26542693, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ZBTB7C m6A modification incurred by METTL3 aberration promotes osteosarcoma progression.
    Title: ZBTB7C m6A modification incurred by METTL3 aberration promotes osteosarcoma progression.
  2. The prognostic and immunological effects of ZBTB7C across cancers: friend or foe?
    Title: The prognostic and immunological effects of ZBTB7C across cancers: friend or foe?
  3. Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data.
    Title: Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data.
  4. Repression of Kr-POK inhibited tumor growth.
    Title: Kr-POK (ZBTB7c) regulates cancer cell proliferation through glutamine metabolism.
  5. ZBTB7C genetic variations were significant for susceptibility to ischemic injury in cerebral ischemia.
    Title: Integrative Mouse and Human Studies Implicate ANGPT1 and ZBTB7C as Susceptibility Genes to Ischemic Injury.
  6. our findings define KR-POK as a transcriptional repressor with a pro-oncogenic role that relies upon binding to p53 and inhibition of its transactivation function.
    Title: KR-POK interacts with p53 and represses its ability to activate transcription of p21WAF1/CDKN1A.
  7. Adm and APM-1 protect endothelium-dependent vascular relaxation in sepsis.
    Title: Adrenomedullin and adrenomedullin binding protein-1 protect endothelium-dependent vascular relaxation in sepsis.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
EBI GWAS Catalog
Genome-wide association study in Han Chinese identifies three novel loci for human height.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ37907

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in negative regulation of cell population proliferation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of fat cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 7C
Names
B230208J24Rik
affected by papillomavirus DNA integration in ME180 cells protein 1
zinc finger and BTB domain containing 36
zinc finger and BTB domain-containing protein 36
zinc finger protein 857C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039360.3 → NP_001034449.1  zinc finger and BTB domain-containing protein 7C

    See identical proteins and their annotated locations for NP_001034449.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC105042, AM988836, CD366839, EF120357
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Related
    ENSP00000439781.1, ENST00000535628.6
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  2. NM_001318841.2 → NP_001305770.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC105042, AM988839, BM983365
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Related
    ENSP00000467877.1, ENST00000590800.6
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  3. NM_001371284.1 → NP_001358213.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Source sequence(s)
    AC105042, AM988839, AM991966
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  4. NM_001371285.1 → NP_001358214.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Source sequence(s)
    AC105042, AM988839, AM991284
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Related
    ENSP00000468782.1, ENST00000588982.5
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  5. NM_001371286.1 → NP_001358215.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Source sequence(s)
    AC024288, AC105042, AM988839, AM991285
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  6. NM_001371287.1 → NP_001358216.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Source sequence(s)
    AC024288, AC105042, AM988839, AM989328, AM991966
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  7. NM_001371288.1 → NP_001358217.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Source sequence(s)
    AC091150, AC105042, AM988839, AM991277
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  8. NM_001371290.1 → NP_001358219.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Source sequence(s)
    AC024288, AC105042, AM988839, AM989330, AM991970
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  9. NM_001371291.1 → NP_001358220.1  zinc finger and BTB domain-containing protein 7C

    Status: VALIDATED

    Source sequence(s)
    AC024288, AC105042, AM988839, AM989330, AM991969
    Consensus CDS
    CCDS32830.1
    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    48026672..48412585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047437347.1 → XP_047293303.1  zinc finger and BTB domain-containing protein 7C isoform X2

  2. XM_047437346.1 → XP_047293302.1  zinc finger and BTB domain-containing protein 7C isoform X2

  3. XM_047437345.1 → XP_047293301.1  zinc finger and BTB domain-containing protein 7C isoform X1

  4. XM_011525864.3 → XP_011524166.1  zinc finger and BTB domain-containing protein 7C isoform X2

    See identical proteins and their annotated locations for XP_011524166.1

    Conserved Domains (4) summary
    smart00225
    Location:44 → 137
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:33 → 136
    BTB; BTB/POZ domain
    pfam13465
    Location:443 → 468
    zf-H2C2_2; Zinc-finger double domain

  5. XM_047437348.1 → XP_047293304.1  zinc finger and BTB domain-containing protein 7C isoform X3

  6. XM_017025609.3 → XP_016881098.1  zinc finger and BTB domain-containing protein 7C isoform X4

    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49
    Conserved Domains (3) summary
    COG5189
    Location:380 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:394 → 414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18328
    Location:9 → 128
    BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

  7. XM_011525865.4 → XP_011524167.1  zinc finger and BTB domain-containing protein 7C isoform X2

    See identical proteins and their annotated locations for XP_011524167.1

    Conserved Domains (4) summary
    smart00225
    Location:44 → 137
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:33 → 136
    BTB; BTB/POZ domain
    pfam13465
    Location:443 → 468
    zf-H2C2_2; Zinc-finger double domain

  8. XM_017025606.3 → XP_016881095.1  zinc finger and BTB domain-containing protein 7C isoform X2

    Conserved Domains (4) summary
    smart00225
    Location:44 → 137
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:33 → 136
    BTB; BTB/POZ domain
    pfam13465
    Location:443 → 468
    zf-H2C2_2; Zinc-finger double domain

  9. XM_047437344.1 → XP_047293300.1  zinc finger and BTB domain-containing protein 7C isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    48217704..48603693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054318277.1 → XP_054174252.1  zinc finger and BTB domain-containing protein 7C isoform X2

  2. XM_054318276.1 → XP_054174251.1  zinc finger and BTB domain-containing protein 7C isoform X2

  3. XM_054318274.1 → XP_054174249.1  zinc finger and BTB domain-containing protein 7C isoform X1

  4. XM_054318275.1 → XP_054174250.1  zinc finger and BTB domain-containing protein 7C isoform X2

  5. XM_054318280.1 → XP_054174255.1  zinc finger and BTB domain-containing protein 7C isoform X3

  6. XM_054318281.1 → XP_054174256.1  zinc finger and BTB domain-containing protein 7C isoform X4

    UniProtKB/Swiss-Prot
    A1YPR0, O73453
    UniProtKB/TrEMBL
    B2RG49

  7. XM_054318278.1 → XP_054174253.1  zinc finger and BTB domain-containing protein 7C isoform X2

  8. XM_054318279.1 → XP_054174254.1  zinc finger and BTB domain-containing protein 7C isoform X2

  9. XM_054318273.1 → XP_054174248.1  zinc finger and BTB domain-containing protein 7C isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1YPR0.1 GenPept UniProtKB/Swiss-Prot:A1YPR0

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