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Rps4x ribosomal protein S4, X-linked [ Mus musculus (house mouse) ]

Gene ID: 20102, updated on 9-Mar-2023

Summary

Official Symbol
Rps4xprovided by MGI
Official Full Name
ribosomal protein S4, X-linkedprovided by MGI
Primary source
MGI:MGI:98158
See related
Ensembl:ENSMUSG00000031320 AllianceGenome:MGI:98158
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rps4; Rps4-1
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Is active in synapse. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and sensory organ. Orthologous to several human genes including RPS4X (ribosomal protein S4 X-linked). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in bladder adult (RPKM 580.8), liver E14 (RPKM 549.2) and 23 other tissues See more
Orthologs
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Genomic context

See Rps4x in Genome Data Viewer
Location:
X D; X 45.2 cM
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101228547..101232997, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102184941..102189391, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene excision repair cross-complementing rodent repair deficiency complementation group 6 like Neighboring gene protein phosphatase 1 regulatory subunit 14B pseudogene Neighboring gene predicted gene 14859 Neighboring gene Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102174, MGC118104

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IDA
Inferred from Direct Assay
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
part_of polysome ISO
Inferred from Sequence Orthology
more info
 
part_of ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
located_in ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of small ribosomal subunit ISA
Inferred from Sequence Alignment
more info
PubMed 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
is_active_in synapse IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
40S ribosomal protein S4, X isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009094.2NP_033120.1  40S ribosomal protein S4, X isoform

    See identical proteins and their annotated locations for NP_033120.1

    Status: VALIDATED

    Source sequence(s)
    AK010676, CF751462, CJ142039
    Consensus CDS
    CCDS41083.1
    UniProtKB/Swiss-Prot
    P62702, Q9CXN0
    UniProtKB/TrEMBL
    A0A6P5P3L2, Q545X8
    Related
    ENSMUSP00000033683.8, ENSMUST00000033683.8
    Conserved Domains (1) summary
    PLN00036
    Location:1260
    PLN00036; 40S ribosomal protein S4; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    101228547..101232997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247553.4XP_011245855.1  40S ribosomal protein S4, X isoform isoform X1

    See identical proteins and their annotated locations for XP_011245855.1

    UniProtKB/TrEMBL
    Q545F8
    Conserved Domains (1) summary
    PLN00036
    Location:1242
    PLN00036; 40S ribosomal protein S4; Provisional