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Rps18 ribosomal protein S18 [ Mus musculus (house mouse) ]

Gene ID: 20084, updated on 9-Sep-2018

Summary

Official Symbol
Rps18provided by MGI
Official Full Name
ribosomal protein S18provided by MGI
Primary source
MGI:MGI:98146
See related
Ensembl:ENSMUSG00000008668 Vega:OTTMUSG00000037085
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ke3; Ke-3; H-2Ke3; H2-Ke3
Expression
Ubiquitous expression in liver E14 (RPKM 498.9), liver E18 (RPKM 438.2) and 28 other tissues See more
Orthologs

Genomic context

See Rps18 in Genome Data Viewer
Location:
17 B1; 17 17.98 cM
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (33951999..33955641, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (34088944..34092586, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene WD repeat domain 46 Neighboring gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 Neighboring gene VPS52 GARP complex subunit Neighboring gene histocompatibility 2, K region locus 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
rRNA binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
postsynaptic density ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
synapse EXP
Inferred from Experiment
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011296.2NP_035426.1  40S ribosomal protein S18

    See identical proteins and their annotated locations for NP_035426.1

    Status: PROVISIONAL

    Source sequence(s)
    M76763
    Consensus CDS
    CCDS37573.1
    UniProtKB/Swiss-Prot
    P62270
    UniProtKB/TrEMBL
    Q561N5
    Related
    ENSMUSP00000008812.7, OTTMUSP00000053262, ENSMUST00000008812.7, OTTMUST00000095450
    Conserved Domains (1) summary
    PTZ00134
    Location:1152
    PTZ00134; 40S ribosomal protein S18; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

    Range
    33951999..33955641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p4 129X1/SvJ

Genomic

  1. NT_039662.3 Reference GRCm38.p4 129X1/SvJ

    Range
    200762..204404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p4 NOD/MrkTac

Genomic

  1. NT_187027.1 Reference GRCm38.p4 NOD/MrkTac

    Range
    260629..264331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p4 NOD/ShiLtJ

Genomic

  1. NT_187004.1 Reference GRCm38.p4 NOD/ShiLtJ

    Range
    260741..264443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_138946.1: Suppressed sequence

    Description
    NM_138946.1: This RefSeq was permanently suppressed because it was entirely composed of intronic sequence.
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