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ALG1L ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like [ Homo sapiens (human) ]

Gene ID: 200810, updated on 5-Jan-2022

Summary

Official Symbol
ALG1Lprovided by HGNC
Official Full Name
ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase likeprovided by HGNC
Primary source
HGNC:HGNC:33721
See related
Ensembl:ENSG00000189366
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALG1L1
Summary
Predicted to enable mannosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be active in endoplasmic reticulum. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See ALG1L in Genome Data Viewer
Location:
3q21.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (125929272..125990537, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (125648115..125709380, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor SR45-like Neighboring gene long intergenic non-protein coding RNA 2614 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4 Neighboring gene uncharacterized LOC102723696 Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene fibrosin like 1 pseudogene Neighboring gene rhophilin associated tail protein 1B Neighboring gene solute carrier family 41 member 3 Neighboring gene uncharacterized LOC105374085 Neighboring gene SLC41A3 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Gene-Smoking Interactions Identify Several Novel Blood Pressure Loci in the Framingham Heart Study.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • asparagine-linked glycosylation 1-like 1
  • beta-1,4-mannosyltransferase-like
  • putative glycosyltransferase ALG1-like

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mannosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in mannosylation IEA
Inferred from Electronic Annotation
more info
 
involved_in protein glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171194.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092903
  2. NR_171195.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092903
    Related
    ENST00000340333.7
  3. NR_171196.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092903
    Related
    ENST00000685849.1
  4. NR_171197.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092903
    Related
    ENST00000686881.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    125929272..125990537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001015050.3: Suppressed sequence

    Description
    NM_001015050.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001195223.2: Suppressed sequence

    Description
    NM_001195223.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001385064.1: Suppressed sequence

    Description
    NM_001385064.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  4. NM_001385066.1: Suppressed sequence

    Description
    NM_001385066.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  5. NM_001385067.1: Suppressed sequence

    Description
    NM_001385067.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  6. NM_001385068.1: Suppressed sequence

    Description
    NM_001385068.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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