U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Rps17 ribosomal protein S17 [ Mus musculus (house mouse) ]

Gene ID: 20068, updated on 8-Dec-2022

Summary

Official Symbol
Rps17provided by MGI
Official Full Name
ribosomal protein S17provided by MGI
Primary source
MGI:MGI:1309526
See related
Ensembl:ENSMUSG00000061787 AllianceGenome:MGI:1309526
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in erythrocyte homeostasis; rRNA processing; and ribosomal small subunit biogenesis. Predicted to act upstream of or within translation. Located in synapse. Is expressed in cerebral cortex ventricular layer and retina. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 631.3), liver E14 (RPKM 563.1) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Rps17 in Genome Data Viewer
Location:
7; 7 D3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (80992481..80994982, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (81342733..81345234, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 44968 Neighboring gene phosphodiesterase 8A Neighboring gene translocase of inner mitochondrial membrane 17a pseudogene Neighboring gene cytoplasmic polyadenylation element binding protein 1 Neighboring gene small nuclear ribonucleoprotein 48 (U11/U12) pseudogene Neighboring gene ribosomal protein L7A, pseudogene 9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC107578, MGC107579

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in erythrocyte homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
 
involved_in ribosomal small subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within translation ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
PubMed 
part_of cytosolic small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in ribosome NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
is_active_in synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009092.3NP_033118.1  40S ribosomal protein S17

    See identical proteins and their annotated locations for NP_033118.1

    Status: VALIDATED

    Source sequence(s)
    AK007992, BC086900
    Consensus CDS
    CCDS40006.1
    UniProtKB/Swiss-Prot
    P63276
    UniProtKB/TrEMBL
    A0A6P5QQY2, A0A8C6G8W4, Q5M9L7
    Related
    ENSMUSP00000079628.5, ENSMUST00000080813.5
    Conserved Domains (1) summary
    pfam00833
    Location:1122
    Ribosomal_S17e; Ribosomal S17

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    80992481..80994982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)