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Rpl36a ribosomal protein L36A [ Mus musculus (house mouse) ]

Gene ID: 19982, updated on 5-Jan-2023

Summary

Official Symbol
Rpl36aprovided by MGI
Official Full Name
ribosomal protein L36Aprovided by MGI
Primary source
MGI:MGI:1201789
See related
Ensembl:ENSMUSG00000079435 AllianceGenome:MGI:1201789
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
L44L; Rpl44
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in endoplasmic reticulum; plasma membrane; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL36A (ribosomal protein L36a). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14 (RPKM 448.8), liver E14.5 (RPKM 302.2) and 19 other tissues See more
Orthologs
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Genomic context

See Rpl36a in Genome Data Viewer
Location:
X; X E3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (133486403..133488811)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (134585654..134588062)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 8A1 Neighboring gene Bruton agammaglobulinemia tyrosine kinase Neighboring gene galactosidase, alpha Neighboring gene heterogeneous nuclear ribonucleoprotein H2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
 
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation at postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation at presynapse NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic large ribosomal subunit IPI
Inferred from Physical Interaction
more info
PubMed 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in presynapse NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in ribosome NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
is_active_in synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in synapse NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
60S ribosomal protein L36a
Names
60S ribosomal protein L44
ribosomal protein L44

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019865.5NP_063918.1  60S ribosomal protein L36a

    See identical proteins and their annotated locations for NP_063918.1

    Status: VALIDATED

    Source sequence(s)
    AK012502, AV453514, BU529569
    Consensus CDS
    CCDS41123.1
    UniProtKB/Swiss-Prot
    P83882
    UniProtKB/TrEMBL
    A0A6P5QSZ5, A0A8C6N495, Q5M9P1
    Related
    ENSMUSP00000108837.2, ENSMUST00000113211.8
    Conserved Domains (1) summary
    PTZ00157
    Location:186
    PTZ00157; 60S ribosomal protein L36a; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    133486403..133488811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)