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NIBAN3 niban apoptosis regulator 3 [ Homo sapiens (human) ]

Gene ID: 199786, updated on 12-Aug-2022

Summary

Official Symbol
NIBAN3provided by HGNC
Official Full Name
niban apoptosis regulator 3provided by HGNC
Primary source
HGNC:HGNC:24130
See related
Ensembl:ENSG00000167483 MIM:609967; AllianceGenome:HGNC:24130
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BCNP1; FAM129C
Expression
Biased expression in spleen (RPKM 12.1), lymph node (RPKM 9.4) and 2 other tissues See more
Orthologs
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Genomic context

See NIBAN3 in Genome Data Viewer
Location:
19p13.11
Exon count:
20
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (17523301..17555537)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (17657937..17688458)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (17634110..17664652)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene solute carrier family 27 member 1 Neighboring gene PGLS divergent transcript Neighboring gene Sharpr-MPRA regulatory region 7913 Neighboring gene 6-phosphogluconolactonase Neighboring gene collagen beta(1-O)galactosyltransferase 1 Neighboring gene Sharpr-MPRA regulatory region 8704 Neighboring gene ribosomal protein L21 pseudogene 130

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ39802

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
protein Niban 3
Names
B-cell novel protein 1
family with sequence similarity 129 member C
niban-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098524.2NP_001091994.2  protein Niban 3 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS42521.1
    Related
    ENSP00000333447.4, ENST00000332386.9
  2. NM_001321826.2NP_001308755.2  protein Niban 3 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS82315.1
    UniProtKB/TrEMBL
    M0R0E0
    Related
    ENSP00000471168.1, ENST00000601861.5
  3. NM_001321827.2NP_001308756.2  protein Niban 3 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS82314.1
    UniProtKB/TrEMBL
    M0QXK3
    Related
    ENSP00000469225.1, ENST00000599164.6
  4. NM_001321828.1NP_001308757.1  protein Niban 3 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC010618, AI688885, AK298062, AY254198
    Consensus CDS
    CCDS82317.1
    UniProtKB/Swiss-Prot
    Q86XR2
    Related
    ENSP00000394929.2, ENST00000449408.6
  5. NM_001363609.1NP_001350538.1  protein Niban 3 isoform f

    Status: VALIDATED

    Source sequence(s)
    AC010618, AK097121, AY254198
    Consensus CDS
    CCDS86723.1
    UniProtKB/TrEMBL
    M0QZV9
    Related
    ENSP00000470798.1, ENST00000599124.1
  6. NM_173544.5NP_775815.3  protein Niban 3 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS12362.1
    UniProtKB/Swiss-Prot
    Q8TEQ3
    Related
    ENSP00000335040.3, ENST00000335393.8

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    17523301..17555537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527786.3XP_011526088.1  protein Niban 3 isoform X5

  2. XM_017026453.2XP_016881942.1  protein Niban 3 isoform X1

  3. XM_017026454.2XP_016881943.1  protein Niban 3 isoform X2

  4. XM_047438389.1XP_047294345.1  protein Niban 3 isoform X8

  5. XM_011527781.4XP_011526083.1  protein Niban 3 isoform X3

  6. XM_011527787.4XP_011526089.1  protein Niban 3 isoform X6

    Related
    ENSP00000468994.1, ENST00000600519.5
  7. XM_047438390.1XP_047294346.1  protein Niban 3 isoform X9

  8. XM_011527789.2XP_011526091.1  protein Niban 3 isoform X7

  9. XM_017026457.2XP_016881946.1  protein Niban 3 isoform X8

  10. XM_047438388.1XP_047294344.1  protein Niban 3 isoform X4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    17657937..17688458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)