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ELAVL4 ELAV like RNA binding protein 4 [ Homo sapiens (human) ]

Gene ID: 1996, updated on 23-Nov-2021

Summary

Official Symbol
ELAVL4provided by HGNC
Official Full Name
ELAV like RNA binding protein 4provided by HGNC
Primary source
HGNC:HGNC:3315
See related
Ensembl:ENSG00000162374 MIM:168360
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HUD; PNEM
Expression
Biased expression in brain (RPKM 9.5), adrenal (RPKM 2.6) and 2 other tissues See more
Orthologs
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Genomic context

See ELAVL4 in Genome Data Viewer
Location:
1p33-p32.3
Exon count:
17
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (50048055..50203772)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (50513727..50669444)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene AGBL carboxypeptidase 4 Neighboring gene uncharacterized LOC105378708 Neighboring gene uncharacterized LOC105378709 Neighboring gene heart enhancer 18 Neighboring gene MT-ND2 pseudogene 29 Neighboring gene uncharacterized LOC105378711 Neighboring gene ELAVL4 antisense RNA 1 Neighboring gene uncharacterized LOC105378710 Neighboring gene long intergenic non-protein coding RNA 2808

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mRNA 3'-UTR AU-rich region binding IDA
Inferred from Direct Assay
more info
PubMed 
enables mRNA 3'-UTR binding IDA
Inferred from Direct Assay
more info
PubMed 
enables poly(A) binding IDA
Inferred from Direct Assay
more info
PubMed 
enables pre-mRNA intronic pyrimidine-rich binding IDA
Inferred from Direct Assay
more info
PubMed 
enables translation regulator activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA stabilization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in RNA processing IDA
Inferred from Direct Assay
more info
PubMed 
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in aging IEA
Inferred from Electronic Annotation
more info
 
involved_in associative learning IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to nerve growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in cerebral cortex neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in locomotory behavior IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of 3'-UTR-mediated mRNA stabilization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of dendrite development IEA
Inferred from Electronic Annotation
more info
 
involved_in regeneration IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of translation at synapse, modulating synaptic transmission IEA
Inferred from Electronic Annotation
more info
 
involved_in response to cocaine IEA
Inferred from Electronic Annotation
more info
 
involved_in response to endoplasmic reticulum stress IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in axon ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in dendrite ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
located_in growth cone IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 
located_in perikaryon IEA
Inferred from Electronic Annotation
more info
 
located_in polysomal ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ELAV-like protein 4
Names
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
ELAV like neuron-specific RNA binding protein 4
Hu antigen D
paraneoplastic encephalomyelitis antigen HuD

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144774.3NP_001138246.1  ELAV-like protein 4 isoform 2

    See identical proteins and their annotated locations for NP_001138246.1

    Status: VALIDATED

    Source sequence(s)
    AL592182, AY033997, BC036071, CK005107
    Consensus CDS
    CCDS44140.1
    UniProtKB/Swiss-Prot
    P26378
    Related
    ENSP00000360889.2, ENST00000371824.7
    Conserved Domains (1) summary
    TIGR01661
    Location:43365
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  2. NM_001144775.3NP_001138247.2  ELAV-like protein 4 isoform 3

    See identical proteins and their annotated locations for NP_001138247.2

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182, AY033996, BC036071, BM509527
    Consensus CDS
    CCDS44139.2
    UniProtKB/Swiss-Prot
    P26378
    UniProtKB/TrEMBL
    A0A0R4J2E6
    Related
    ENSP00000349594.5, ENST00000357083.8
    Conserved Domains (1) summary
    TIGR01661
    Location:79401
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  3. NM_001144776.3NP_001138248.1  ELAV-like protein 4 isoform 4

    See identical proteins and their annotated locations for NP_001138248.1

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182, AY033995, BC036071
    Consensus CDS
    CCDS44138.1
    UniProtKB/Swiss-Prot
    P26378
    Related
    ENSP00000360892.1, ENST00000371827.5
    Conserved Domains (1) summary
    TIGR01661
    Location:43365
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  4. NM_001144777.3NP_001138249.1  ELAV-like protein 4 isoform 5

    See identical proteins and their annotated locations for NP_001138249.1

    Status: VALIDATED

    Source sequence(s)
    AL592182, BC036071, DC351092
    Consensus CDS
    CCDS53315.1
    UniProtKB/Swiss-Prot
    P26378
    Related
    ENSP00000399939.2, ENST00000448907.7
    Conserved Domains (1) summary
    TIGR01661
    Location:46368
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  5. NM_001294348.2NP_001281277.1  ELAV-like protein 4 isoform 6

    See identical proteins and their annotated locations for NP_001281277.1

    Status: VALIDATED

    Source sequence(s)
    AK298902, AL592182, BC036071
    Consensus CDS
    CCDS72788.1
    UniProtKB/Swiss-Prot
    P26378
    UniProtKB/TrEMBL
    B1APY9
    Related
    ENSP00000360884.1, ENST00000371819.1
    Conserved Domains (1) summary
    TIGR01661
    Location:48370
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  6. NM_001324208.2NP_001311137.1  ELAV-like protein 4 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182, AL645730
    Conserved Domains (1) summary
    TIGR01661
    Location:46382
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  7. NM_001324209.2NP_001311138.1  ELAV-like protein 4 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182
    Conserved Domains (1) summary
    TIGR01661
    Location:42351
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  8. NM_001324212.2NP_001311141.1  ELAV-like protein 4 isoform 13

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182
    Conserved Domains (1) summary
    TIGR01661
    Location:42364
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  9. NM_001324213.2NP_001311142.1  ELAV-like protein 4 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182
    Consensus CDS
    CCDS81321.1
    UniProtKB/TrEMBL
    B1APY8
    Related
    ENSP00000360886.1, ENST00000371821.6
    Conserved Domains (1) summary
    TIGR01661
    Location:48384
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  10. NM_001324214.2NP_001311143.1  ELAV-like protein 4 isoform 13

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182
    Related
    ENSP00000498318.1, ENST00000651258.1
    Conserved Domains (1) summary
    TIGR01661
    Location:42364
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  11. NM_001324215.2NP_001311144.1  ELAV-like protein 4 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182
    Conserved Domains (1) summary
    TIGR01661
    Location:48357
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  12. NM_001324216.1NP_001311145.1  ELAV-like protein 4 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182
    Related
    ENSP00000498618.1, ENST00000652693.1
    Conserved Domains (1) summary
    cd12650
    Location:45118
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
  13. NM_001324217.2NP_001311146.1  ELAV-like protein 4 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182
    Conserved Domains (1) summary
    cd12650
    Location:50123
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
  14. NM_021952.5NP_068771.2  ELAV-like protein 4 isoform 1

    See identical proteins and their annotated locations for NP_068771.2

    Status: VALIDATED

    Source sequence(s)
    AL592182, AY033998, BC036071, CK005107
    Consensus CDS
    CCDS553.1
    UniProtKB/Swiss-Prot
    P26378
    Related
    ENSP00000360888.4, ENST00000371823.8
    Conserved Domains (1) summary
    TIGR01661
    Location:43379
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RNA

  1. NR_136725.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL583843, AL592182

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    50048055..50203772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017000542.1XP_016856031.1  ELAV-like protein 4 isoform X13

    Related
    ENST00000492299.2
    Conserved Domains (1) summary
    cd12650
    Location:48121
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
  2. XM_024453827.1XP_024309595.1  ELAV-like protein 4 isoform X9

    Conserved Domains (1) summary
    TIGR01661
    Location:36358
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  3. XM_011540893.2XP_011539195.1  ELAV-like protein 4 isoform X4

    See identical proteins and their annotated locations for XP_011539195.1

    Conserved Domains (4) summary
    cd12650
    Location:45122
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
    cd12656
    Location:294379
    RRM3_HuD; RNA recognition motif 3 in vertebrate Hu-antigen D (HuD)
    TIGR01661
    Location:43379
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:127216
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. XM_017000541.1XP_016856030.1  ELAV-like protein 4 isoform X12

  5. XM_017000538.1XP_016856027.1  ELAV-like protein 4 isoform X5

    Related
    ENSP00000498865.1, ENST00000651347.1
    Conserved Domains (4) summary
    cd12650
    Location:58135
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
    cd12656
    Location:293378
    RRM3_HuD; RNA recognition motif 3 in vertebrate Hu-antigen D (HuD)
    TIGR01661
    Location:56378
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:140229
    RRM_SF; RNA recognition motif (RRM) superfamily
  6. XM_006710411.3XP_006710474.1  ELAV-like protein 4 isoform X2

    See identical proteins and their annotated locations for XP_006710474.1

    Conserved Domains (1) summary
    TIGR01661
    Location:56392
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  7. XM_011540889.3XP_011539191.1  ELAV-like protein 4 isoform X1

    See identical proteins and their annotated locations for XP_011539191.1

    Conserved Domains (1) summary
    TIGR01661
    Location:79415
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  8. XM_017000540.1XP_016856029.1  ELAV-like protein 4 isoform X11

    Conserved Domains (1) summary
    TIGR01661
    Location:79156
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  9. XM_011540890.2XP_011539192.1  ELAV-like protein 4 isoform X3

    See identical proteins and their annotated locations for XP_011539192.1

    Conserved Domains (1) summary
    TIGR01661
    Location:79388
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  10. XM_024453829.1XP_024309597.1  ELAV-like protein 4 isoform X10

    Related
    ENSP00000498979.1, ENST00000650764.1
    Conserved Domains (1) summary
    TIGR01661
    Location:43352
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  11. XM_011540895.3XP_011539197.1  ELAV-like protein 4 isoform X6

    See identical proteins and their annotated locations for XP_011539197.1

    Conserved Domains (1) summary
    TIGR01661
    Location:42378
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  12. XM_011540894.2XP_011539196.1  ELAV-like protein 4 isoform X6

    See identical proteins and their annotated locations for XP_011539196.1

    Conserved Domains (1) summary
    TIGR01661
    Location:42378
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  13. XM_024453822.1XP_024309590.1  ELAV-like protein 4 isoform X7

    Conserved Domains (1) summary
    TIGR01661
    Location:55377
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  14. XM_024453825.1XP_024309593.1  ELAV-like protein 4 isoform X8

    Conserved Domains (1) summary
    TIGR01661
    Location:42364
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  15. XM_017000539.1XP_016856028.1  ELAV-like protein 4 isoform X9

    Related
    ENSP00000498523.1, ENST00000652274.1
    Conserved Domains (1) summary
    TIGR01661
    Location:36358
    ELAV_HUD_SF; ELAV/HuD family splicing factor
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