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Snord3a small nucleolar RNA, C/D box 3A [ Mus musculus (house mouse) ]

Gene ID: 19850, updated on 8-Feb-2024

Summary

Official Symbol
Snord3aprovided by MGI
Official Full Name
small nucleolar RNA, C/D box 3Aprovided by MGI
Primary source
MGI:MGI:97977
See related
Ensembl:ENSMUSG00000106147 AllianceGenome:MGI:97977
Gene type
snRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnu3a
Summary
Acts upstream of or within response to bacterium. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See Snord3a in Genome Data Viewer
Location:
10 B1; 10 21.81 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (40134464..40134675)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (40258468..40258679)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:39952398-39952599 Neighboring gene ribosome production factor 2 homolog Neighboring gene STARR-positive B cell enhancer ABC_E10600 Neighboring gene STARR-seq mESC enhancer starr_26413 Neighboring gene general transcription factor IIIC, polypeptide 6, alpha Neighboring gene S-adenosylmethionine decarboxylase 1 Neighboring gene STARR-positive B cell enhancer ABC_E2319 Neighboring gene STARR-seq mESC enhancer starr_26414 Neighboring gene predicted gene 8948

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002842.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131684
    Related
    ENSMUST00000196710.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    40134464..40134675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)