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LKAAEAR1 LKAAEAR motif containing 1 [ Homo sapiens (human) ]

Gene ID: 198437, updated on 18-Sep-2020

Summary

Official Symbol
LKAAEAR1provided by HGNC
Official Full Name
LKAAEAR motif containing 1provided by HGNC
Primary source
HGNC:HGNC:33718
See related
Ensembl:ENSG00000171695
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf201
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See LKAAEAR1 in Genome Data Viewer
Location:
20q13.33
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (64083375..64084956, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (62714729..62715712, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene SOX18 promoter region Neighboring gene transcription elongation factor A2 Neighboring gene SRY-box transcription factor 18 Neighboring gene regulator of G protein signaling 19 Neighboring gene microRNA 6813 Neighboring gene opioid related nociceptin receptor 1 Neighboring gene neuropeptides B and W receptor 2 Neighboring gene B6.7 minisatellite repeat instability region

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

General protein information

Preferred Names
protein LKAAEAR1
Names
LKAAEAR motif-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007125.3NP_001007126.1  protein LKAAEAR1 isoform 1

    See identical proteins and their annotated locations for NP_001007126.1

    Status: VALIDATED

    Source sequence(s)
    AL590548
    Consensus CDS
    CCDS33509.1
    UniProtKB/Swiss-Prot
    Q8TD35
    Related
    ENSP00000310801.2, ENST00000308906.6
    Conserved Domains (1) summary
    pfam15478
    Location:40175
    LKAAEAR; Family of unknown function with LKAAEAR motif
  2. NM_001353425.2NP_001340354.1  protein LKAAEAR1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL590548
    Consensus CDS
    CCDS86972.1
    Related
    ENSP00000302763.4, ENST00000302096.4
    Conserved Domains (1) summary
    pfam15478
    Location:40175
    LKAAEAR; Family of unknown function with LKAAEAR motif
  3. NM_001386971.1NP_001373900.1  protein LKAAEAR1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL590548

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    64083375..64084956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005260200.3XP_005260257.3  protein LKAAEAR1 isoform X2

    UniProtKB/Swiss-Prot
    Q8TD35
    Conserved Domains (1) summary
    pfam15478
    Location:40175
    LKAAEAR; Family of unknown function with LKAAEAR motif
  2. XM_024451849.1XP_024307617.1  protein LKAAEAR1 isoform X1

    Conserved Domains (1) summary
    pfam15478
    Location:40175
    LKAAEAR; Family of unknown function with LKAAEAR motif
  3. XM_024451850.1XP_024307618.1  protein LKAAEAR1 isoform X1

    Conserved Domains (1) summary
    pfam15478
    Location:40175
    LKAAEAR; Family of unknown function with LKAAEAR motif
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