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Rcn1 reticulocalbin 1 [ Mus musculus (house mouse) ]

Gene ID: 19672, updated on 7-Aug-2018

Summary

Official Symbol
Rcn1provided by MGI
Official Full Name
reticulocalbin 1provided by MGI
Primary source
MGI:MGI:104559
See related
Ensembl:ENSMUSG00000005973 Vega:OTTMUSG00000014990
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rcn
Expression
Broad expression in limb E14.5 (RPKM 50.5), adrenal adult (RPKM 36.1) and 22 other tissues See more
Orthologs

Genomic context

See Rcn1 in Genome Data Viewer
Location:
2 E3; 2 55.18 cM
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (105385948..105399319, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (105226105..105239476, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene Wilms tumor 1 homolog Neighboring gene thioesterase superfamily member 7 Neighboring gene predicted gene, 39900 Neighboring gene RIKEN cDNA 4930527A07 gene Neighboring gene paired box 6 opposite strand 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
camera-type eye development IMP
Inferred from Mutant Phenotype
more info
PubMed 
in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009037.2NP_033063.1  reticulocalbin-1 precursor

    See identical proteins and their annotated locations for NP_033063.1

    Status: VALIDATED

    Source sequence(s)
    AK017494, AK133971, BB612908
    Consensus CDS
    CCDS16498.1
    UniProtKB/Swiss-Prot
    Q05186
    Related
    ENSMUSP00000006128.6, OTTMUSP00000015956, ENSMUST00000006128.6, OTTMUST00000035593
    Conserved Domains (3) summary
    COG5126
    Location:62232
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:204267
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl08302
    Location:166224
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    105385948..105399319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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