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CCER1 coiled-coil glutamate rich protein 1 [ Homo sapiens (human) ]

Gene ID: 196477, updated on 13-Mar-2020

Summary

Official Symbol
CCER1provided by HGNC
Official Full Name
coiled-coil glutamate rich protein 1provided by HGNC
Primary source
HGNC:HGNC:28373
See related
Ensembl:ENSG00000197651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C12orf12
Expression
Restricted expression toward testis (RPKM 6.6) See more
Orthologs

Genomic context

See CCER1 in Genome Data Viewer
Location:
12q21.33
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (90952215..90955176, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (91345992..91348953, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369895 Neighboring gene long intergenic non-protein coding RNA 615 Neighboring gene epiphycan Neighboring gene keratocan

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC26598

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
coiled-coil domain-containing glutamate-rich protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152638.4NP_689851.1  coiled-coil domain-containing glutamate-rich protein 1

    See identical proteins and their annotated locations for NP_689851.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the functional protein.
    Source sequence(s)
    AC078873, BC027600
    Consensus CDS
    CCDS9036.1
    UniProtKB/Swiss-Prot
    Q8TC90
    Related
    ENSP00000351727.2, ENST00000358859.3
    Conserved Domains (1) summary
    pfam15482
    Location:4219
    CCER1; Coiled-coil domain-containing glutamate-rich protein family 1

RNA

  1. NR_130711.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment, compared to variant 1. This variant is represented as non-coding because it lacks all of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AC078873, BC027600, BX114695

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    90952215..90955176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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