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GARIN6 golgi associated RAB2 interactor family member 6 [ Homo sapiens (human) ]

Gene ID: 196472, updated on 29-Oct-2022

Summary

Official Symbol
GARIN6provided by HGNC
Official Full Name
golgi associated RAB2 interactor family member 6provided by HGNC
Primary source
HGNC:HGNC:28594
See related
Ensembl:ENSG00000180219 AllianceGenome:HGNC:28594
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM71C
Expression
Restricted expression toward testis (RPKM 10.9) See more
Orthologs
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Genomic context

See GARIN6 in Genome Data Viewer
Location:
12q23.1
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (99647753..99650114)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (99612431..99614791)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (100041531..100043892)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1B Neighboring gene uncharacterized LOC101928937 Neighboring gene RNA, 5S ribosomal pseudogene 366 Neighboring gene ribosomal protein S4X pseudogene 1 Neighboring gene bridge-like lipid transfer protein family member 3B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
Golgi-associated RAB2 interactor protein 6
Names
Golgi associated RAB2 interactor protein 6
family with sequence similarity 71 member C
protein FAM71C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153364.4NP_699195.1  Golgi-associated RAB2 interactor protein 6

    See identical proteins and their annotated locations for NP_699195.1

    Status: VALIDATED

    Source sequence(s)
    AA401734, AC141554, AW181907, BC031221, DB055853, DB514813
    Consensus CDS
    CCDS9072.1
    UniProtKB/Swiss-Prot
    B2R6Y6, Q8NEG0
    Related
    ENSP00000315247.1, ENST00000324341.2
    Conserved Domains (1) summary
    pfam12480
    Location:115183
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    99647753..99650114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    99612431..99614791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)