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LINC02909 long intergenic non-protein coding RNA 2909 [ Homo sapiens (human) ]

Gene ID: 196415, updated on 13-May-2022

Summary

Official Symbol
LINC02909provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2909provided by HGNC
Primary source
HGNC:HGNC:27282
See related
Ensembl:ENSG00000226397 AllianceGenome:HGNC:27282
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C12orf77
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See LINC02909 in Genome Data Viewer
Location:
12p12.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (24993424..24997465, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (24863524..24867561, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (25146358..25150399, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984475 Neighboring gene brain protein I3 pseudogene 2 Neighboring gene inositol 1,4,5-triphosphate receptor associated 2 Neighboring gene centromere protein U pseudogene 2 Neighboring gene dynein axonemal intermediate chain 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171024.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023510, KF459549
    Related
    ENST00000623395.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    24993424..24997465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    24863524..24867561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001101339.3: Suppressed sequence

    Description
    NM_001101339.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.