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Utp14b UTP14B small subunit processome component [ Mus musculus (house mouse) ]

Gene ID: 195434, updated on 4-Nov-2022

Summary

Official Symbol
Utp14bprovided by MGI
Official Full Name
UTP14B small subunit processome componentprovided by MGI
Primary source
MGI:MGI:2445092
See related
Ensembl:ENSMUSG00000079470 AllianceGenome:MGI:2445092
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
jsd; 4932411L21Rik
Summary
Acts upstream of or within spermatogenesis. Predicted to be located in cytosol. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP14A (UTP14A small subunit processome component) and UTP14C (UTP14C small subunit processome component). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in colon adult (RPKM 6.7), CNS E11.5 (RPKM 4.2) and 27 other tissues See more
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Genomic context

See Utp14b in Genome Data Viewer
Location:
1 C4; 1 40.84 cM
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (78635542..78645318)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (78657825..78667601)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene monoacylglycerol O-acyltransferase 1 Neighboring gene predicted gene, 39665 Neighboring gene RIKEN cDNA 5730419F03 gene Neighboring gene U6 spliceosomal RNA Neighboring gene acyl-CoA synthetase long-chain family member 3 Neighboring gene predicted gene, 51635 Neighboring gene predicted gene, 38631 Neighboring gene predicted gene, 33693

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Spontaneous (1) 
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within spermatogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
U3 small nucleolar RNA-associated protein 14 homolog B
Names
UTP14, U3 small nucleolar ribonucleoprotein, homolog B
juvenile spermatogonial depletion protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001981.4NP_001001981.2  U3 small nucleolar RNA-associated protein 14 homolog B

    See identical proteins and their annotated locations for NP_001001981.2

    Status: VALIDATED

    Source sequence(s)
    AC156613
    Consensus CDS
    CCDS15086.1
    UniProtKB/Swiss-Prot
    Q6EJB6
    UniProtKB/TrEMBL
    E9Q9S3
    Related
    ENSMUSP00000052149.6, ENSMUST00000053760.12
    Conserved Domains (1) summary
    pfam04615
    Location:55741
    Utp14; Utp14 protein
  2. NM_001136226.2NP_001129698.1  U3 small nucleolar RNA-associated protein 14 homolog B

    See identical proteins and their annotated locations for NP_001129698.1

    Status: VALIDATED

    Source sequence(s)
    AC156613
    Consensus CDS
    CCDS15086.1
    UniProtKB/TrEMBL
    E9Q9S3
    Related
    ENSMUSP00000121391.2, ENSMUST00000151622.2
    Conserved Domains (1) summary
    pfam04615
    Location:55741
    Utp14; Utp14 protein
  3. NM_001409066.1NP_001395995.1  U3 small nucleolar RNA-associated protein 14 homolog B

    Status: VALIDATED

    Source sequence(s)
    AC156613
    UniProtKB/TrEMBL
    E9Q9S3
  4. NM_001409067.1NP_001395996.1  U3 small nucleolar RNA-associated protein 14 homolog B

    Status: VALIDATED

    Source sequence(s)
    AC156613
    UniProtKB/TrEMBL
    E9Q9S3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    78635542..78645318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)